SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NP_001179899.1.76553 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NP_001179899.1.76553
Domain Number 1 Region: 7-188
Classification Level Classification E-value
Superfamily p53-like transcription factors 1.74e-74
Family Rel/Dorsal transcription factors, DNA-binding domain 0.0000000483
Further Details:      
 
Domain Number 2 Region: 183-307
Classification Level Classification E-value
Superfamily E set domains 1.14e-44
Family NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain 0.00000379
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) NP_001179899.1.76553
Sequence length 591
Comment proto-oncogene c-Rel [Bos taurus]; AA=GCF_000003055.6; RF=representative genome; TAX=9913; STAX=9913; NAME=Bos taurus; breed=Hereford; AL=Chromosome; RT=Minor
Sequence
MASGGFNPCIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQILNYYGKGK
VRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVKDAVI
SRVRAGINPFNVPEQQLLDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRA
PNTAELRICRVNKNCGSVKGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGVFSQADVHRQV
AIVFKTPPYCKAIIEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLF
HKLWQDCGVNFPERPRPSPLGPTGEGRFIKKEPNLFSHGAVLPETSRPVSSQAESYYSSS
ASISSTLSHPASAMLPMGTQSSSGWSSVAHPTSRSVNTNSLSSFSTGTLSSNSQVIPPFL
EMSDLNVSNACIYNNTNDIGRMEASSVSPADLYSISDASMLPNCPVNMITPSNDSMRETD
NPRLVSMNLENPSCNSVLDPRDLRQLHQMSPSSMSTVTSSSTTAYVAQSEAFEGSDFNCA
DNSMINEAGPSNSTNANSHGFGPNSQYSGIGAMQNEQLSDSFAFEFFKVNL
Download sequence
Identical sequences NP_001179899.1.59421 NP_001179899.1.76553

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]