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Domain assignment for NP_001331378.1.80155 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  NP_001331378.1.80155
Domain Number 1 Region: 99-280
Classification Level Classification E-value
Superfamily TRAF domain-like 1.18e-47
Family SIAH, seven in absentia homolog 0.0023
Further Details:      
 
Weak hits

Sequence:  NP_001331378.1.80155
Domain Number - Region: 39-76
Classification Level Classification E-value
Superfamily RING/U-box 0.000671
Family RING finger domain, C3HC4 0.011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) NP_001331378.1.80155
Sequence length 314
Comment Protein with RING/U-box and TRAF-like domain [Arabidopsis thaliana]; AA=GCF_000001735.3; RF=reference genome; TAX=3702; STAX=3702; NAME=Arabidopsis thaliana; ecotype=Columbia; AL=Chromosome; RT=Major
Sequence
MEDSNSHPQNQTSKRKSSHPQKKQRMENETRSAKLLDLDVLDCPVCFEPLTIPTFQCDDG
HIVCNFCFAKVSNKCPGPGCDLPIGNKRCFAMERVLESAFVPCQNTEFGCTKSVSYEKVS
SHEKECNYSQCSCPNLECNYTGSYNIIYGHFMRRHLYNSTIVSSKWGYSTVDVLINIKEK
VSVLWESRQKLLFVVQCFKERHGVYVTVRRIAPPASEFKKFSYRLSYSIDGHNVTYESPE
VKRLLEVNSQIPDDSFMFVPNCLLHGFLIKPANEVQQVTIAQETVMEDPPTSLFKNSVPI
REDQIQNAITNSIR
Download sequence
Identical sequences Q9FM14
NP_001331378.1.80155

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