SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NP_196801.1.80155 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NP_196801.1.80155
Domain Number 1 Region: 41-178
Classification Level Classification E-value
Superfamily C2 domain (Calcium/lipid-binding domain, CaLB) 4.98e-33
Family Synaptotagmin-like (S variant) 0.075
Further Details:      
 
Domain Number 2 Region: 201-353
Classification Level Classification E-value
Superfamily C2 domain (Calcium/lipid-binding domain, CaLB) 1.42e-32
Family Synaptotagmin-like (S variant) 0.064
Further Details:      
 
Domain Number 3 Region: 362-491
Classification Level Classification E-value
Superfamily C2 domain (Calcium/lipid-binding domain, CaLB) 3.12e-26
Family PLC-like (P variant) 0.017
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) NP_196801.1.80155
Sequence length 769
Comment Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [Arabidopsis thaliana]; AA=GCF_000001735.3; RF=reference genome; TAX=3702; STAX=3702; NAME=Arabidopsis thaliana; ecotype=Columbia; AL=Chromosome; RT=Major
Sequence
MQKPGQNIDFALKETSPKIGAGSVTGDKLCSTYDLVEQMHYLYVRVVKAKELPGKDVTGS
CDPYVEVKLGNYRGMTKHFEKRSNPEWKQVFAFSKERIQASILEVVVKDKDVVLDDLIGR
IMFDLNEIPKRVPPDSPLAPQWYRLEDRHGRKVKGELMLAVWMGTQADEAFSDAWHSDAA
TVGPEGVTHIRSKVYLSPKLWYVRVNVIEAQDLIPHDKTKFPEVYVKAMLGNQTLRTRIS
QTKTLNPMWNEDLMFVVAEPFEEALILAVEDRVAPNKDETLGRCAIPLQNVQRRLDHRPL
NSRWFNLEKHIMVEGEQKEIKFASRIHLRIFLEGGYHVLDESTHYSSDLRPTAKQLWKPS
IGLLEVGIISAHGLMPMKSKDGKGTTDAYCVAKYGQKWIRTRTIVDSFTPKWNEQYTWEV
FDTCTVITFGAFDNGHIPGGSGKDLRIGKVRIRLSTLEADRIYTHSYPLLVFHPSGIKKT
GEIQLAVRFTCLSLINMLHMYSQPLLPKMHYIHPLSVLQLDSLRHQAMNIVSARLNRAEP
PLRKEIVEYMLDVDSHMWSMRRSKANFFRIMNVLSGLIAVGKWFDQICNWRNPITTILIH
VLFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAVHPDELDEEFDT
FPTSRSSEIVRMRYDRLRSIGGRVQTVIGDLATQGERFLSLLSWRDPRATTLFVLFCLIA
AIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNLFRRLPARSDSLL
Download sequence
Identical sequences Q9LXU2
AT5G12970.1 AT5G12970.1 NP_196801.1.80155 3702.AT5G12970.1-P

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]