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Domain assignment for NP_620113.1.57765 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  NP_620113.1.57765
Domain Number 1 Region: 834-1004
Classification Level Classification E-value
Superfamily Positive stranded ssRNA viruses 5.3e-62
Family Comoviridae-like VP 0.0057
Further Details:      
 
Domain Number 2 Region: 1176-1342
Classification Level Classification E-value
Superfamily Positive stranded ssRNA viruses 3.06e-52
Family Comoviridae-like VP 0.0012
Further Details:      
 
Domain Number 3 Region: 1009-1169
Classification Level Classification E-value
Superfamily Positive stranded ssRNA viruses 1.03e-43
Family Comoviridae-like VP 0.01
Further Details:      
 
Weak hits

Sequence:  NP_620113.1.57765
Domain Number - Region: 127-164
Classification Level Classification E-value
Superfamily DnaJ/Hsp40 cysteine-rich domain 0.0458
Family DnaJ/Hsp40 cysteine-rich domain 0.0049
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) NP_620113.1.57765
Sequence length 1357
Comment polyprotein [Beet ringspot virus]; AA=GCF_000860405.1; RF=na; TAX=191547; STAX=191547; NAME=Beet ringspot virus; strain=S; AL=Complete Genome; RT=Major
Sequence
MGFRELFASSLGDAARAKASLVRGMSGWLNTTLATVQAAGPEIRACAYSALWAEVDSVKE
LVPLSATMLLNQLRADLKCAQVRAQKCTPASTSRFCSCGGIPLPGENKWEDELVPIPDCP
VGRNFCRDGVFCKRHHGPGETLERVQVLVEAPKCPHCQGTGIIPRSEPMAYIRSEYERQT
KTFARPSNPLHEWILEEGRESNHARRCSNWYHMSMSQIDKRDNDPCDASTWMAAAQILFD
NADAQVYYPGSNYRKLVGGSKGYDDWCQLPPSKEMCNRLFDWWHRQNTPDYYVSEDTLAD
FVKPRMGSCHLPIEHDVHLLPREWHGRVSAGNTSHFMACLDGLSSSMEEFLDVFYDCAAQ
FNGDIEIFLDTNEKPSRVVGNLGGVRVLLTTPAVCSPAKLLPEIEESDFDQLEDESISCD
SMIPPLFRDNGLSALYANLVLKQATVQSILMAHPDQDEIEDQVDHLENKQGGEIVTTPAF
IKMLKEKRKEVRGKEFAEGSEGRLVRASDLTLSREDVFLSGGLFEKFRKSGIVQTFKGKD
PKLTKVCVDLTNSQEIIKYPSKEMCSDSSGVHTGQVFTVLNRPLYNELNKLAESGWKEAK
SVCLNLHIRSYVPVHTPLYAFCVIMWGHSSDAETASLCGAGVYLGDQEAAVLELPLVCSY
LGNSLEDFDAYKRSLVLSTVFFGKSGLFAGQNVFGITAVEFTEYMPTSYGGITHERDSWQ
AMLRNHQGKDKGRFIAGFNVVDALERDKEEPIKMPNLDLEPVPRTQPIVRTFTGEGKQPL
LNKSRSMRIQSFVSFRGSNIPVGRRIDNTAEAINYELGRASTSSVSSRLDESKCNLKAGG
SYAFGETIELPATVTPGTVLAVFNIFDKIQETNTKVCSKWLEQGYVSQNLTAISHLAPNA
FSGIAIWYIFDAYGKIPGDVTTTFELEMARSFDPHVQVLRDVSTSTWVIDFHKICGQTLN
FSGQGYCVPKIWVIAASTFQLARSTATKFRLEFYTRGEKLVRGLAEQPLSYPIEARHLTD
LNLMLAPKQIAVGTYAMITFPVSLAAKLQSTSGRTAYSYAAGLLSHFLGVGGTIHFVVRT
TSSAFVTSKLRIALWGTVPETDQLAQMPHVDVEVNVDASLQIQSPFFSTANFGNSGSAFY
VSTLCAPMAPETVETGSEYYIQIKGIEANPGLCREINYKQRFAWCLLECLDNSKASPIKV
KIPSRIGNLSSKHVKVTNFVNALAILCATTGMHHGNCTIHFSWLWHPAELGKQLGRLKFV
QGMGINNEHIGDTMCYNSLSNTHSVPFQFGSFAGPITSGGKADEAENWIEIQSPDFSWVA
SLHVSIEVHEGFKFYGRSAGPLTIPATVADVSAVSGS
Download sequence
Identical sequences P14547
POL2_BRSV gi|20260801|ref|NP_620113.1| NP_620113.1.57765

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