SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NP_659570.1.87134 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NP_659570.1.87134
Domain Number 1 Region: 43-133
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 2.01e-37
Family SCAN domain 0.0000713
Further Details:      
 
Domain Number 2 Region: 355-411
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 5.69e-24
Family Classic zinc finger, C2H2 0.0038
Further Details:      
 
Domain Number 3 Region: 585-642
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.08e-23
Family Classic zinc finger, C2H2 0.0071
Further Details:      
 
Domain Number 4 Region: 537-586
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.16e-19
Family Classic zinc finger, C2H2 0.0047
Further Details:      
 
Domain Number 5 Region: 400-452
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.28e-16
Family Classic zinc finger, C2H2 0.0036
Further Details:      
 
Domain Number 6 Region: 771-823
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 4.93e-16
Family Classic zinc finger, C2H2 0.0066
Further Details:      
 
Domain Number 7 Region: 698-751
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 9.71e-16
Family Classic zinc finger, C2H2 0.0077
Further Details:      
 
Domain Number 8 Region: 221-261
Classification Level Classification E-value
Superfamily KRAB domain (Kruppel-associated box) 0.000000000000327
Family KRAB domain (Kruppel-associated box) 0.0023
Further Details:      
 
Domain Number 9 Region: 642-697
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.0000000000155
Family Classic zinc finger, C2H2 0.0093
Further Details:      
 
Weak hits

Sequence:  NP_659570.1.87134
Domain Number - Region: 743-769
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00857
Family Classic zinc finger, C2H2 0.017
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) NP_659570.1.87134
Sequence length 839
Comment zinc finger protein with KRAB and SCAN domains 5 isoform a [Homo sapiens]; AA=GCF_000306695.2; RF=na; TAX=9606; STAX=9606; NAME=Homo sapiens; AL=Chromosome; RT=Major
Sequence
MIMTESREVIDLDPPAETSQEQEDLFIVKVEEEDCTWMQEYNPPTFETFYQRFRHFQYHE
ASGPREALSQLRVLCCEWLRPELHTKEQILELLVLEQFLTILPEEFQPWVREHHPESGEE
AVAVIENIQRELEERRQQIVACPDVLPRKMATPGAVQESCSPHPLTVDTQPEQAPQKPRL
LEENALPVLQVPSLPLKDSQELTASLLSTGSQKLVKIEEVADVAVSFILEEWGHLDQSQK
SLYRDDRKENYGSITSMGYESRDNMELIVKQISDDSESHWVAPEHTERSVPQDPDFAEVS
DLKGMVQRWQVNPTVGKSRQNPSQKRDLDAITDISPKQSTHGERGHRCSDCGKFFLQASN
FIQHRRIHTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPYKCQVCGKAFRVSSHLVQH
HSVHSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSQRCSDKRSKNTKLSVKKKISEYS
EADMELSGKTQRNVSQVQDFGEGCEFQGKLDRKQGIPMKEILGQPSSKRMNYSEVPYVHK
KSSTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPFRCEECGKSYNQRVHLTQHQRVHT
GEKPYTCPLCGKAFRVRSHLVQHQSVHSGERPFKCNECGKGFGRRSHLAGHLRLHSREKS
HQCRECGEIFFQYVSLIEHQVLHMGQKNEKNGICEEAYSWNLTVIEDKKIELQEQPYQCD
ICGKAFGYSSDLIQHYRTHTAEKPYQCDICRENVGQCSHTKQHQKIYSSTKSHQCHECGR
GFTLKSHLNQHQRIHTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPINTLSVEGSLL
Download sequence
Identical sequences Q9Y2L8
hso003005608.3 9606.ENSP00000322872 ENSP00000322872 NP_001305011.1.87134 NP_001305011.1.92137 NP_055384.1.87134 NP_055384.1.92137 NP_659570.1.87134 NP_659570.1.92137 XP_016867407.1.92137 XP_016867408.1.92137 ENSP00000322872 ENSP00000377725 ENSP00000392104 gi|11036642|ref|NP_055384.1| gi|21483182|ref|NP_659570.1| ENSP00000322872 ENSP00000377725 ENSP00000392104

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]