SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NP_976243.2.100692 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NP_976243.2.100692
Domain Number 1 Region: 270-392
Classification Level Classification E-value
Superfamily Tudor/PWWP/MBT 4.69e-24
Family PWWP domain 0.0078
Further Details:      
 
Domain Number 2 Region: 134-263
Classification Level Classification E-value
Superfamily Bromodomain 3.53e-17
Family Bromodomain 0.0026
Further Details:      
 
Domain Number 3 Region: 86-152
Classification Level Classification E-value
Superfamily FYVE/PHD zinc finger 0.0000000000552
Family PHD domain 0.017
Further Details:      
 
Domain Number 4 Region: 613-656
Classification Level Classification E-value
Superfamily HIT/MYND zinc finger-like 0.000000127
Family MYND zinc finger 0.013
Further Details:      
 
Weak hits

Sequence:  NP_976243.2.100692
Domain Number - Region: 516-585
Classification Level Classification E-value
Superfamily Heat shock protein 70kD (HSP70), C-terminal subdomain 0.029
Family Heat shock protein 70kD (HSP70), C-terminal subdomain 0.0062
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) NP_976243.2.100692
Sequence length 658
Comment zinc finger MYND domain-containing protein 11 beta isoform [Rattus norvegicus]; AA=GCF_000001895.5; RF=representative genome; TAX=10116; STAX=10116; NAME=Rattus norvegicus; strain=mixed; AL=Chromosome; RT=Major
Sequence
MARLTKRRQADTKAIQHLWAAIEIIRNQKQIANIDRITKYMSRVHGMHPKETTRQLSLAV
KDGLIVETLTVGCKGSKAGIEQEGYWLPGDEIDWETETHDWYCFECHLPGEVLICDLCFR
VYHSKCLSDEFRLRDSSSHWQCPVCRSIKKKHSNKQEMGTYLRFIVSRMKERAIDLNKKG
KDSKHPMYRRLVHSAVDVPTIQEKVNEGKYRSYEEFKADAQLLLHNTVIFYGADSEQADI
ARMLYKDTCHELDELQLCKNCFYLSNARPDNWFCYPCIPNHELVWAKMKGFGFWPAKVMQ
KEDNQVDVRFFGHHHQRAWIPSENIQDITVNVHRLHVKRSMGWKKACDELELHQRFLREG
RFWKSKNEDRGEEEAESSISSTSNEQLKATQEPRAKKGRRNQSVEPKKEVSCPPHSVQVA
VERGKSLKVRSRQSSNIRQVKAQSPDSCRCGLLLDQHASAQSPSPEPEPETEAVSSSQEI
PTMPQPIERVSVSTQTKKLSASSPRMLHRSTQTASDGVCQSMCHDKYTKIFNDFKDRMKS
DHKRETERVVREALEKLRSEMEEEKRQAVNKAVANMQGEMDRKCKQVKEKCKEEFVEEIK
KLAAQHKQLISQTKKKQWCYNCEEEAMYHCCWNTSYCSIKCQQEHWHAEHKRTCRRKR
Download sequence
Identical sequences F7FKH2
NP_976243.2.100692 NP_976243.2.4139 XP_006254216.1.100692 XP_006254217.1.100692 ENSRNOP00000042280

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]