SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for WP_000179609.1.32692 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  WP_000179609.1.32692
Domain Number 1 Region: 156-434
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 1.28e-72
Family RecA protein-like (ATPase-domain) 0.0000000161
Further Details:      
 
Domain Number 2 Region: 115-191
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 6.28e-28
Family Cold shock DNA-binding domain-like 0.00011
Further Details:      
 
Domain Number 3 Region: 68-113
Classification Level Classification E-value
Superfamily Rho N-terminal domain-like 0.0000000000208
Family Rho termination factor, N-terminal domain 0.0036
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) WP_000179609.1.32692
Sequence length 482
Comment transcription termination factor Rho [Leptospira interrogans]; AA=GCF_000343225.1; RF=na; TAX=1291337; STAX=173; NAME=Leptospira interrogans serovar Copenhageni str. Fiocruz LV4173; strain=Fiocruz LV4173; AL=Contig; RT=Major
Sequence
MATARRDNKNRHQHSNHNHNNQNDSGDSFEEESTNQESQEFDSSENSDPRSRKRKRGGYE
GPAPAPIDLVELKKKAISDLIEVAKSLGVENTGGLKKQNLIFAILQAQAERDGQVHAAGV
MEKLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKESERFFAML
RVETVNSYTPDVAGKRALFDNLTPLYPNERLKMEYDPSMLDTRILDLMCPIGKGQRALIV
APPRTGKTILMQNIANAITSNHPECSLIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQ
RHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNQVIPTSGKILSGGVDSNALHKP
KRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEIHLDRKLSDKRIFPA
IDINKSGTRKEELLITKDVLQKVFVLRKVLSPMSITESMELLLEKMRLSKTNDAFLASMN
TQ
Download sequence
Identical sequences A0A1N6QU29 A0A1X8WPV4 M6RK08 Q72P40
267671.LIC12636 gi|45658473|ref|YP_002559.1| WP_000179609.1.10054 WP_000179609.1.100943 WP_000179609.1.101113 WP_000179609.1.101360 WP_000179609.1.11367 WP_000179609.1.12257 WP_000179609.1.12296 WP_000179609.1.13846 WP_000179609.1.14057 WP_000179609.1.14552 WP_000179609.1.15739 WP_000179609.1.17129 WP_000179609.1.17260 WP_000179609.1.1759 WP_000179609.1.17762 WP_000179609.1.18168 WP_000179609.1.19091 WP_000179609.1.20233 WP_000179609.1.23212 WP_000179609.1.23353 WP_000179609.1.2392 WP_000179609.1.250 WP_000179609.1.28 WP_000179609.1.30921 WP_000179609.1.30957 WP_000179609.1.32453 WP_000179609.1.32692 WP_000179609.1.32859 WP_000179609.1.33670 WP_000179609.1.339 WP_000179609.1.34457 WP_000179609.1.35633 WP_000179609.1.36128 WP_000179609.1.3754 WP_000179609.1.38403 WP_000179609.1.39007 WP_000179609.1.39787 WP_000179609.1.39967 WP_000179609.1.40783 WP_000179609.1.41353 WP_000179609.1.42222 WP_000179609.1.43311 WP_000179609.1.43353 WP_000179609.1.4572 WP_000179609.1.46812 WP_000179609.1.48092 WP_000179609.1.48207 WP_000179609.1.49352 WP_000179609.1.50786 WP_000179609.1.50904 WP_000179609.1.51217 WP_000179609.1.52005 WP_000179609.1.52351 WP_000179609.1.53255 WP_000179609.1.55693 WP_000179609.1.56120 WP_000179609.1.61658 WP_000179609.1.63084 WP_000179609.1.63541 WP_000179609.1.63646 WP_000179609.1.64760 WP_000179609.1.65294 WP_000179609.1.65513 WP_000179609.1.668 WP_000179609.1.67344 WP_000179609.1.6761 WP_000179609.1.68426 WP_000179609.1.72166 WP_000179609.1.72187 WP_000179609.1.7280 WP_000179609.1.72830 WP_000179609.1.73302 WP_000179609.1.74515 WP_000179609.1.74558 WP_000179609.1.75054 WP_000179609.1.75377 WP_000179609.1.76404 WP_000179609.1.76971 WP_000179609.1.77242 WP_000179609.1.78069 WP_000179609.1.7821 WP_000179609.1.78551 WP_000179609.1.79237 WP_000179609.1.81803 WP_000179609.1.82393 WP_000179609.1.83201 WP_000179609.1.84222 WP_000179609.1.84450 WP_000179609.1.86863 WP_000179609.1.87123 WP_000179609.1.8721 WP_000179609.1.8748 WP_000179609.1.87797 WP_000179609.1.88844 WP_000179609.1.89725 WP_000179609.1.90537 WP_000179609.1.91009 WP_000179609.1.91013 WP_000179609.1.91017 WP_000179609.1.91046 WP_000179609.1.91324 WP_000179609.1.9249 WP_000179609.1.95586 WP_000179609.1.95836 WP_000179609.1.9683 WP_000179609.1.97198 WP_000179609.1.97216 WP_000179609.1.97703 WP_000179609.1.9886

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]