SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for WP_000390557.1.4535 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  WP_000390557.1.4535
Domain Number - Region: 642-727,837-886
Classification Level Classification E-value
Superfamily DPP6 N-terminal domain-like 0.000251
Family DPP6 N-terminal domain-like 0.044
Further Details:      
 
Domain Number - Region: 1051-1087
Classification Level Classification E-value
Superfamily BRK domain-like 0.0562
Family BRK domain-like 0.0073
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) WP_000390557.1.4535
Sequence length 1128
Comment MULTISPECIES: type IV secretion protein Rhs [Shigella]; AA=GCF_001649185.1; RF=na; TAX=623; STAX=623; NAME=Shigella flexneri; strain=SH4s06; AL=Contig; RT=Major
Sequence
MEEAFWAARQGDALLHTSFMADVLGAVLEVAANVVIDALIVGTTSLLATSVGITMGCTAV
VLTGFVAGVAMVYTGVTEKVSEACSALANMLFPPQIEGYILTGSGDTWINSKPAARAAAT
AASRQDIEAQEAQAKAEQEEAQRQEDARTFRDVAGEYLEMAGAIALAVNPVTGPVLMSRA
LHDQLSTEEGRSEMVDGVTHFVSELWQPTVASAAPGSTPTPDDKIDCHKHPSSLTQFLAQ
KKAAFLDDPLGTALNLLNPGGMLETAFQGVNAVIGSISNLFKGDDEPPAAEYIAEGARDV
RINSQPATRSGARCTCEARVVNEPGNGAFVSPDVRIGGPLLVVRDIRSGRSQITLVATVA
LMFLRPGKMLSKIACFAASVGMSMLTQKATSALPHPVNAATGAKYLADDDDFDFSLPGHF
PLDWQRVYSSRDERTEGMFGQGWSVMYEVSLVCTPGSADENCMTFVSGMGRRLDMEAVLP
GGGFYSPGEGLAVRRGEQGHWLISSDDGQCFLFEADPHHPQRQRLKMLGDRNSNCLNLYY
DDRGRIVEISGEQQRPCIRLYYELAAHPRRVTQIYQHFPETAPLLLRRYSYDEAGHLNGV
YDSTGHLLREFAYDENHCMTLHRQPGGEGYYYQWGWYEGPDDAAWRVTGHHTDSGEQYRL
AWDLAQRRLCVTDGLGRTRYHQWDAQNQVTAYQDEAGQVTTFRWSDEERLLLGMTDPQGG
KWRYVYDLQGHITETHDPLGRVEQAQWHPVWHQPETEVDAAGNLLGRRAGERATAENSVV
PFNRLMSYRGVHYRYDEFGRAVEKEGRSGTQSYRYDAEHRMVEVTTARGTYRYVYDALGR
RTEKQHISPDGKPYNRTKFLWDGMRLAQESRPEGTGSLYIYRDQGSYEPLARVDKAGKEG
PNRILYFHTDVNGAPEEMTDSDGKIVWETGYQVWGNTIQEKDHGGVEQNLRYQGQYLDRE
TGLHYNLHRYYDPDVGRFMVTDPIGLRGGLNLYSYAPNPLKYADPLGLTPCAVSNQKANR
LLDSSETKVTVRSRSDAEQLFMDRYLGHNYKNMTGESGPSTKNLMEYLTENKTKAGSYHW
DDIKDPSVTKPSYRVSGHGPGNPDGDLPHLQVHQHGGSVRHIFFPWET
Download sequence
Identical sequences A0A226K8A8 A0A233AFV6 D2A9V9
gi|384542195|ref|YP_005726257.1| WP_000390557.1.101545 WP_000390557.1.101667 WP_000390557.1.19024 WP_000390557.1.19453 WP_000390557.1.20484 WP_000390557.1.22522 WP_000390557.1.22771 WP_000390557.1.23622 WP_000390557.1.2433 WP_000390557.1.24547 WP_000390557.1.25038 WP_000390557.1.25799 WP_000390557.1.26005 WP_000390557.1.27472 WP_000390557.1.2931 WP_000390557.1.35368 WP_000390557.1.35649 WP_000390557.1.36129 WP_000390557.1.37155 WP_000390557.1.37549 WP_000390557.1.37730 WP_000390557.1.38202 WP_000390557.1.39063 WP_000390557.1.39358 WP_000390557.1.41391 WP_000390557.1.41449 WP_000390557.1.43561 WP_000390557.1.4445 WP_000390557.1.44627 WP_000390557.1.44671 WP_000390557.1.4535 WP_000390557.1.45392 WP_000390557.1.45799 WP_000390557.1.45949 WP_000390557.1.46429 WP_000390557.1.47775 WP_000390557.1.52406 WP_000390557.1.54989 WP_000390557.1.55070 WP_000390557.1.56358 WP_000390557.1.57150 WP_000390557.1.59165 WP_000390557.1.59226 WP_000390557.1.60342 WP_000390557.1.63612 WP_000390557.1.64793 WP_000390557.1.64930 WP_000390557.1.65484 WP_000390557.1.66978 WP_000390557.1.6701 WP_000390557.1.67412 WP_000390557.1.70341 WP_000390557.1.72342 WP_000390557.1.72449 WP_000390557.1.72748 WP_000390557.1.74509 WP_000390557.1.75124 WP_000390557.1.76447 WP_000390557.1.76460 WP_000390557.1.76957 WP_000390557.1.78377 WP_000390557.1.80463 WP_000390557.1.82507 WP_000390557.1.83286 WP_000390557.1.83321 WP_000390557.1.84164 WP_000390557.1.84986 WP_000390557.1.85008 WP_000390557.1.85416 WP_000390557.1.89998 WP_000390557.1.90314 WP_000390557.1.95712 WP_000390557.1.96128 WP_000390557.1.96769 WP_000390557.1.97815 WP_000390557.1.98323

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]