SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for WP_001043468.1.47553 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  WP_001043468.1.47553
Domain Number 1 Region: 48-145
Classification Level Classification E-value
Superfamily Multidrug resistance efflux transporter EmrE 0.000000000000209
Family Multidrug resistance efflux transporter EmrE 0.013
Further Details:      
 
Domain Number 2 Region: 192-289
Classification Level Classification E-value
Superfamily Multidrug resistance efflux transporter EmrE 0.0000000000122
Family Multidrug resistance efflux transporter EmrE 0.013
Further Details:      
 
Weak hits

Sequence:  WP_001043468.1.47553
Domain Number - Region: 10-42
Classification Level Classification E-value
Superfamily Positive stranded ssRNA viruses 0.0736
Family Picornaviridae-like VP (VP1, VP2, VP3 and VP4) 0.029
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) WP_001043468.1.47553
Sequence length 309
Comment EamA family transporter [Acinetobacter baumannii]; AA=GCF_002016995.1; RF=na; TAX=470; STAX=470; NAME=Acinetobacter baumannii; strain=ABUH570; AL=Contig; RT=Major
Sequence
MNKSMVYAYTGVVITMLFWGSAFNAMSYVIQYMPPLSAAAERFTIASLGLFILFAAIGKL
RWAALRQNLAIYLIIGIIGIAGFNLGCFYGLQTTSAVNGALIMATTPLITLLLTILLDGE
KLTLNKSIGVVFGLSGVLFVISHGHISTLLHLKIAIGDLFILLGGVSFCLANVLSRRYVK
NATPLETTTFSMMFGALTLIILSVIFEHPSQAIAMAPITAHLAMGYVIICSTMIAYLFWF
NGIQKLGAGRASIFFNFVPVFSMLVALLAGQSLNIWQLIGTGLVMLGVMSSGGFIQIKRP
ALIAKPCTK
Download sequence
Identical sequences WP_001043468.1.1194 WP_001043468.1.12109 WP_001043468.1.15066 WP_001043468.1.16760 WP_001043468.1.17097 WP_001043468.1.17414 WP_001043468.1.20987 WP_001043468.1.28778 WP_001043468.1.30498 WP_001043468.1.31312 WP_001043468.1.32983 WP_001043468.1.33773 WP_001043468.1.33871 WP_001043468.1.3755 WP_001043468.1.3856 WP_001043468.1.38689 WP_001043468.1.39799 WP_001043468.1.40497 WP_001043468.1.42581 WP_001043468.1.44385 WP_001043468.1.45239 WP_001043468.1.45307 WP_001043468.1.47141 WP_001043468.1.47553 WP_001043468.1.48026 WP_001043468.1.48977 WP_001043468.1.50150 WP_001043468.1.50220 WP_001043468.1.51254 WP_001043468.1.51876 WP_001043468.1.52766 WP_001043468.1.53965 WP_001043468.1.54108 WP_001043468.1.55491 WP_001043468.1.58503 WP_001043468.1.59450 WP_001043468.1.5988 WP_001043468.1.64231 WP_001043468.1.64610 WP_001043468.1.68258 WP_001043468.1.68726 WP_001043468.1.71616 WP_001043468.1.72010 WP_001043468.1.72081 WP_001043468.1.72476 WP_001043468.1.73392 WP_001043468.1.73737 WP_001043468.1.74393 WP_001043468.1.76590 WP_001043468.1.77531 WP_001043468.1.78361 WP_001043468.1.79020 WP_001043468.1.80655 WP_001043468.1.80905 WP_001043468.1.80989 WP_001043468.1.8264 WP_001043468.1.91612 WP_001043468.1.99806

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]