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Domain assignment for WP_001949305.1.98736 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  WP_001949305.1.98736
Domain Number 1 Region: 137-362
Classification Level Classification E-value
Superfamily Radical SAM enzymes 1.31e-40
Family Oxygen-independent coproporphyrinogen III oxidase HemN 0.02
Further Details:      
 
Weak hits

Sequence:  WP_001949305.1.98736
Domain Number - Region: 400-430
Classification Level Classification E-value
Superfamily Calpain large subunit, middle domain (domain III) 0.0765
Family Calpain large subunit, middle domain (domain III) 0.0091
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) WP_001949305.1.98736
Sequence length 439
Comment 30S ribosomal protein S12 methylthiotransferase RimO [Helicobacter pylori]; AA=GCF_000345325.2; RF=na; TAX=1159040; STAX=210; NAME=Helicobacter pylori GAM250T; strain=GAM250T; AL=Scaffold; RT=Minor
Sequence
MQVKENKQLCLISLGCSKNLVDSEVMLGKLYNYTLTNDAKKADVILINTCGFIESAKQES
IQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKKQNQ
FSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVE
DLALKGYKDMTFIAQDSSSFLYDKGQKDGLIQLIKAIDKQQALKSARILYLYPSSTTLEL
IGAIEDSPVFQNYFDMPIQHISDSMLKKMRRNSSQVHHLKLLNAMKQVKESFIRSTIIVG
HPEENEGEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSLEKVPKKIINARIKALNKIAL
KHQNHSFKALLNKPIKALVEHKEGEYFYKARDLRWAPEVDGEILINDSALTTPLQPGHYT
IVPSAFKDNILLAKVLSPF
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Identical sequences M3S0I4
WP_001949305.1.17107 WP_001949305.1.24769 WP_001949305.1.26026 WP_001949305.1.2746 WP_001949305.1.28876 WP_001949305.1.30174 WP_001949305.1.3425 WP_001949305.1.39102 WP_001949305.1.4080 WP_001949305.1.62964 WP_001949305.1.73394 WP_001949305.1.79497 WP_001949305.1.84887 WP_001949305.1.98736

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