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Domain assignment for WP_004521009.1.84102 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  WP_004521009.1.84102
Domain Number 1 Region: 62-187,237-278,328-430,490-537,569-608,765-1063
Classification Level Classification E-value
Superfamily Porins 1.65e-61
Family Ligand-gated protein channel 0.01
Further Details:      
 
Weak hits

Sequence:  WP_004521009.1.84102
Domain Number - Region: 454-483
Classification Level Classification E-value
Superfamily WWE domain 0.00837
Family WWE domain 0.0096
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) WP_004521009.1.84102
Sequence length 1063
Comment MULTISPECIES: receptor protein [Neisseria]; AA=GCF_000173955.1; RF=na; TAX=546268; STAX=28449; NAME=Neisseria subflava NJ9703; strain=NJ9703; AL=Contig; RT=Major
Sequence
MQPTKVTTLSACIAAIGFVPAVYAADNSTVILDTITVKGTRNKDEIGKNRVYAREIVNLY
KGKNEVETFKGNTVSDLLSGMSGVYSGDARNSGALDPNIRGVQGQGRIPVTIDGTEQAIT
VWRGYAGANNRNYVDPNIISSVSIEKGPSFSRDMKSGIGGSVALKTIDADDIVPEGKKYG
FEVKAEASNNSIKQRANVYEKSVDYRTLDAPVVALGGIWRAMLDDTDRVSQRFSGRNKFG
EDKAYRIAAATKQDNFDVMLAYAYRSKGNYFSGKKGAERYGYIGPWTMETVNELNRRVAD
AAARGEKFYGSENMLGSPDIAKIGLFYHPGGEVTNTSLETKSWVGKTTFLLPNHQTLKFG
LRHTDAIFGEIMPSRVIGPIYATPENLNKIAEWPRAWVKQRSYNIDYAWKPEGSRWIDLS
ASLWTTRTKSKTNTAGGSPGDALYEDRVDNLSPWKTAMNRWHTYDEETKRIIEEAGYTKK
PDVVEQLPNTNGRFNTIEGNAYYANNTRNGFNFSNRMKLHDKLTLTLMGDFQNEKLRSRN
EFAEELRNEGRDKYPEEVEEGKIRANYELTNFGEPRNGRRREWNLGFNFRYQPLNWLTLT
AGARYTNFKIQDHSERLKTGIDSWGQPLMMNRGMAYKLTRVATEQEYRDYLNAINNDEFN
AARDSIVIDERGVAILNPTPRYDENRPRLDKLEYYWLKDDKGRLNPSTNPIFSTPSLVTP
VVNPAYDPNNPDSPRMVLPYKMLARDGGDNYLTPITPAELQRARKQGGSGWAPAFSATVN
FTDYARAYLRYTETLRFPSIFEGTYGFSTAAGSFARYGYGWKPEHAKNWEIGYIHDLTGL
FPKMKSADFRINYFHNKTKNVIDRDYNLEFEQFDKLLRTGVELQTRFDTGKFFGGLGVLR
TLKNWMCDDSYAYRDIDVVSKYLQEGKLIKHPTCNHGSITGGYLATAIQPRWSIDADLGG
RFFSNKLESGVRFHFHSRVYQNRRAIFQAYYDQAGYGKQAAPDYMRWQPVATWDAYLRYK
IGKNLTAELVGTNLGNRYYLDPINPTHMPAPGRTIRIGITGKF
Download sequence
Identical sequences D3A8B6
WP_004521009.1.45944 WP_004521009.1.84102

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