SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for WP_080388796.1.61624 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  WP_080388796.1.61624
Domain Number 1 Region: 2561-2804
Classification Level Classification E-value
Superfamily PMT central region-like 1.57e-56
Family PMT central region-like 0.0067
Further Details:      
 
Domain Number 2 Region: 3186-3305
Classification Level Classification E-value
Superfamily alpha/beta-Hydrolases 4.05e-23
Family Haloperoxidase 0.046
Further Details:      
 
Domain Number 3 Region: 4280-4486
Classification Level Classification E-value
Superfamily beta-Roll 0.00000000000000615
Family Serralysin-like metalloprotease, C-terminal domain 0.0029
Further Details:      
 
Domain Number 4 Region: 4195-4288
Classification Level Classification E-value
Superfamily beta-Roll 0.0000366
Family Serralysin-like metalloprotease, C-terminal domain 0.003
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) WP_080388796.1.61624
Sequence length 4558
Comment RTX toxin RtxA [Vibrio cholerae]; AA=GCF_001411585.1; RF=na; TAX=666; STAX=666; NAME=Vibrio cholerae; strain=YB2G01; AL=Contig; RT=Major
Sequence
MVFYLIPKRRVWLMGKPFWRSVEYFFTGNYSADDGNNNIVAIGFGGQIHAYGGDDHVTVG
SIGATVYTGSGNDTVVGGSAYLKVEDSTGHLTVKGAAGYADINKSGDGNVSFAGAAGGVS
IDHLGNHGDVSYGGAAAYNGITRKGLSGNVTFAGAGGYNALWHETNQGNLSFTGAGAGNK
LDRTWFNRYQGSHGDVTFDGAGAANSISSRVETGNITFRGAGADNHLVRKGKVGDITLQG
AGASNRIERTHQAEDVYTQTRGNIRFEGVGGYNSLYSDVAHGDIHFSGGGAYNTIIRKGS
GNDFAKEGMTNAKADEIVLTKAVMSGSWIGQDHHVTAVKSASEPNTYLFAFADSTYTKIN
KVQLRNDPQTGELKYYSSAWYKEGNHLSNLANQDISDNGGFTAVNINGAYTLSDLKVEHQ
QSVTVHAVEKSLTEYEWVTYANGAVIDAKEVSLSDAKMGGHAIYADGTKVDVKAVKSNRQ
PNTYIYAKVLGPYTKIVVVELANDPETGALKYQARSWYKEGDHTANIANQDISSATGYNP
MGKGGYSLSDLHYSVNAVRSTSETVADIEEYTDQTLFKPANDSGESSGDVRFNGAGGGNV
IKSNVTRGNVHFNGGGIANVILHSSQFGNTEFNGGGAANVIVKSGEEGDLTFRGAGLANV
LVHQSQQGKMDVYAGGAVNVLVRLGDGQYLAHLLAYGNISVQKGSGDSRVVMLGGYNTHT
QIGSGNGLWLAAGGFNVMTQVGQGDVAAVLAGGANVLTKMGEGELTSGMLGGANVITHIS
NDDQLSNTTAVALGGANILTKKGKGNTLAVMGGGANVLTHVGDGTTTGVMVGGANILTKV
GNGDTTGIMLGVGNVLTHVGDGQTLGVMGAAGNIFTKVGDGTSIAVMIGAGNIFTHVGEG
NAWALMGGLGNVFTKVGNGDALALMVAEANVFTHIGDGMSVALMLAKGNVATKVGNGTTL
AAMVGNANIFTHIGHGSTFAAMIGQANIMTKVGNDLTAALMVGKANIMTHVGDGTSLGLF
AGEVNVMTKVGNGTTLAAMFGKANIMTHVGDGLTGVLALGEANIVTKVGDDFMGVVAAAK
ANVVTHVGDATTAAVLAGKGNILTKVGEGTTVGLLISDVGNVMTHVGDGTTIGIAKGKAN
LITKVGDGLGVNVAWGQANVFTQVGDGDRYNFAKGEANLITKVGDGQELSVVQGEANIIT
HVGNGDDYTGAWGKANVITKVGHGQNVVLAKGEANIVTQVGDGDSFNALWSKGNIVTKVG
DGMQVTAAKGQANITTTVGNGLNVTAAYGDANINTKVGDGVSVNVAWGKYNINTKVGDGL
NVAVMKGKANANIHVGDGLNINASYAQNNVAIKVGNGDFYSLAVASSNTSSNKLSALFDN
IKQTVLGVGGSQAINYLVQGDEASSSGTHKGRGAIATPEITKLDGFQMDAIKEVGSDLGD
SLTGSVTKVDTPDLNKMQHALNVDDSSVQAPNLIVNGDFEQGEHGWQSTHGVEVSYAGSV
YGVEGEGHGARVTELDTYTNTSLYQDLANLAQGEVIAVSFDFAKRVGLSNNEGIEVLWNG
EVVFSSSGDESAWQQKTLKLTAQAGSNRIEFKGTGHNDGLGYILDNVVATSESSQQANAI
REHATQNPAAQNALSDKERAEADRHRLEQEKQKQLDAVAGSQSQLESTDQQALENNGQAQ
RDAVQEESEAITAELTKLAQGLDVLDSQATHTGESGDQWRNEFASGLLAGVQTQLDDAKQ
LANEKIAEAKQTHADNQNKVKDAVAKSEAGVAKGEQNRAGAEHDIADAQADAEKRKADAL
AKGKDAQQAESDAHHAVNNAQSRGDRDVQVAENKANQVQADAQGAKQNEGDRPDRQGVTG
SGLSGNAHSVEGAGETDSHVNTDSQTNADGRFSEGLTEQEQEALEGATNAVNRLQINAGI
RAKNSVSSMTSMFSETNSKSIVVPTKVSPEPERQEVTRRDVRISGVNLESLSAVQGSQPT
SQLASKSVPGFKSHFASTSIGIENELSGLVVVLPKNSAQTFGYVHDSQGNPLFMLTKDMN
QGGYSNPVGINDIQGVNNWQTHTIELVTYPSEISDTAAVESRKEAMLWLAKEFTDHINQS
NHQSLPHLASDDGRFTLVISNSKHLIAAGNGTSIDAQGKTIGMTPSGQQATMAISAKEFG
TSSSSEVRLLESAPWYQAGLRDEFLANAKNTTLDDPATAQNVYAYLTSVYSKTADLAKEY
GIYINDWDPASEGFSPNAQGLTDPKVKNAWSILPRTKPVRMLELLSAEDSRYVRQQIAEK
LKGTYSESLAKNVFEYFQYGGEVAGHGINNATTGSVQQPEPAILFEFRSVPSALSDFVPK
TASTVKVDVKALDHFDSASRKAIITEVNALVSGSEDFDAWYQEYRASKGQPPVKNPKSSA
SANHKAEWLMTQHAEQWAKITAPYTDNHETLTSTKLAPNDKEELHALGETSNLEHNKQQE
NVASIINTMLNDMLPFYALRTERNLLVQEGDEGFEVRAWPGTEDKSKTIILEDPEDAAQH
KAIERFILANFDNFEQMPDELFLVDNKVISHHEGRTHVLAQKVDGAWQYNATVELMSVTE
LLDAANVTGKIRGESYQQVIDALTDYHASITEHADYEPESVEKLLNLRKKIEGYVLGHPD
SGRVEAMNSLLNQVNTRLDEVSLLSVAEQAIQAQDSFSRLYDQLEAANLKESKHLYLDQN
GDFVTKGKGNLANIDLLGSREAVLEKVKLTVSNEYGQTVADTIFAGLSAKDLAKDGKGVD
IAGLNKVHQAIEQHLSPVSATLYIWKPSDHSALGHAALQIGQGRTQLEGQAAADFNQQNY
VSWWPLGSKSSNISNILNVATKDQPDLKLRWSDFSQPAHQNDTLEHDVASEENDGFGLHD
GDIKLKRFIEKLNVAKGIDASFKEASEGYASVLLGNPDMLETTGIPAHVFQPFVEQWNDT
SYDMMDVANRFAQELRLQAQRSDDPELLEKRIGNVVRQFAERALEEIETFKASQADQGRV
FRINLEGLDVAAMQAEWHRLSNDPDARYQLLTKNCSSTVAKVLKAGGADKLIGHTWLPKF
GVWTPTELFNFGQALQEAQLEIAAKKQSHQVTDVLDALSGNEKPKENVAIENDGTPPRDK
ESLSPLTRFLNNELYGDKEARRKIGEITQTLLDHAVEKGESQKITLQGEAGRLTGYYHQG
TAPSEGETSSPSGKVVLFLHGSGSSAEEQASAIRNHYQKQGIDMLAVNLRGYGESDGGPS
EKGLYQDARTMFNYLVNDKGIDPSNIIIHGYSMGGPIAADLARYAAQNGQAVSGLLLDRP
MPSMTKAITAHEVANPAGIVGAIAKAVNGQFSVEKNLEGLPKETSILLLTDNEGLGNEGE
KLRTKLTASGYNVTGEQTFYGHEASNRLMSQYADQIVSGLSSSASVDEDLDQQGLDTTST
KDQGVSNKDDHLQVVDSKEALADGKILHNQDVNGWGPITVTPTTDGGETRFDGQIIVQME
NDDVVAKAAANLAGKHPESSVVVQLDSDGNYRVVYGDPSKLDGKLRWQLVGHGRDHSESN
NTRLSGYSADELAVKLAKFQQSFNQAENINNKPDHISIVGCFLVSDDKQKGFGHQFINAM
DANGLRVDVSVRSSELAIDEAGRKHTKDANGDWVQKAENNKVSLSWDAQGEVVAKDERIR
NGIAEGDIDLSRIGVSDVDELARGAIGDNNDVFDAPEKRKPETEVIANSSSSNQLSYSGN
IQVNVGEGEFTAVNWGTSNVGIKVGTGGFKSLAFGDNNVMVHIGDGESKHSVDIGGYQAL
EGAQMFLGNRNVSFNFGHSNDLILMMDKSIPTPPLVNPFDGAARISGVLQGIATSGEGED
WLAAQEQQWTLSGAKKFVKDMSGLDQSSSVDYTTLVELDSQNERDSRGLKHDAEATLNKQ
YNQWLSGNGNSGTSQLSRADKLRQANEKLAFNFAVGGQGADIQVTTGNWNFMFGDNIQSI
LDTNLGSLFGLMTQQFTATGQAKTTFTYTPQDLPRQLKNKLLGQLAGVGAETTLADIFGV
DYTASGQIVSRNGQAVDGVAILKEMLEVIGEFSGDQLQAFVDPAKLLDSLKAGIDMGADG
IKSFAETHGLKEKAPEEEKDNSSVSVNGANVNSAQGATMADGNTETAETQDRALGFNSLN
LPNLFATIFSQDKQKEMKSLVENLKQNLTADLLNMKEKTFDFLRNSGHLQGDGDINISLG
NYNFNWGGDGKDLGAYLGDNNNFWGGRGDDVFYATGTSNIFTGGEGHDMGVLMGRENMMF
GGDGNDTAVVAGRINHVFLGAGDDQSFVFGEGGEIDTGSGRDYVVTSGNFNRVDTGDDQD
YSVTIGNNNQVELGAGNDFANVFGNYNRINAGAGNDVVKLMGYHAVLNGGDGDDHLIATA
ISKFSQFNGGEGRDLMVLGGYQNTFKGGTDVDSFVVSGDVIDNLVEDIRSEDNIVFNGID
WQKLWFERSGYDLKLSILRDPSNDSDQSKFEHIGSVTFSDYFNGNRAQVVIGMSDKDLSG
EREYTMLSDSAIDALVQAMSGFEPQAGDNGFIDSLESKSQATISMAWSDVVHKKGLMV
Download sequence
Identical sequences WP_080388796.1.2496 WP_080388796.1.4701 WP_080388796.1.61624 WP_080388796.1.68863 WP_080388796.1.90120

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]