SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_002638621.1.8413 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_002638621.1.8413
Domain Number 1 Region: 489-580
Classification Level Classification E-value
Superfamily Small-conductance potassium channel 2.49e-37
Family Small-conductance potassium channel 0.0000696
Further Details:      
 
Domain Number 2 Region: 391-530
Classification Level Classification E-value
Superfamily Voltage-gated potassium channels 6.15e-27
Family Voltage-gated potassium channels 0.0028
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_002638621.1.8413
Sequence length 742
Comment Hypothetical protein CBG05673 [Caenorhabditis briggsae]; AA=GCF_000004555.1; RF=representative genome; TAX=6238; STAX=6238; NAME=Caenorhabditis briggsae; strain=AF16; AL=Chromosome; RT=Major
Sequence
MDTILFDSYISVSLSLSIFLLYELKNIGGASEKSEGFRYAFAPHNIWSFRMKNCPFLQAY
DISKKFEIEGYFLIFSIIKKMRIFTRKTIVDTIFFFFDDSTAKMRCRLRKQLFIRRNKAS
SDFRRNRYRGKFPGKKEEKFSCNFIYLFHRRVEYVCANLVSRSQNRKKTQLKKCGRVCDI
SLFLAVLGLILVIIDSELTALSDSTGVTKASPISVTLRSACVVSTFFLICCLVNYHAIEV
KIALIDSGADDWRVAFSTDRFVKMLIEVLVCMICPFPGEFEPGKIYYGFKHNFQKFRFLG
TFNKNKHRQTLTEFMKLETDNKVFSDGLMKMPYINADTRHVKMINVPVDVLLSVPMFLRS
YLVCRFMVLHSKQFQDAATRSIAALNRISMDFRFVIKTMMADHPLRVLIVFTLSYWMCMS
WMFTQCERYDGQLDVEHYYLNSMWFIMVTFMSIGYGDIVPNTYCGRCLSITTGIVGAGVS
SALIAIISRKLELSRAEKHVNNFMADSKLTNQRKNAAASVLQETWFIHKYKKALHKGDDL
RLRHHQRRFLHSINEFRRIKWDQRKLQEKGNSLLDVGKLHSDMHETLWEMHRTQDHFISQ
IDVLTQKIMELQMTLNTRPPCCAPANTSSNDAYFSTSTQIGTVLPTVVPAIPLPSQSPML
HASQSHREPLQISTTSPSSNGLQNSASIPRISVGSTSSSTSSGASSGNGSLPQCTVDQLS
NCPTGGIYATVTTPLISSFEEV
Download sequence
Identical sequences A8X0E8
CBG05673 6238.CBG05673 XP_002638621.1.8413

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]