SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_002680788.1.8020 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  XP_002680788.1.8020
Domain Number - Region: 48-84
Classification Level Classification E-value
Superfamily DNA-binding protein LAG-1 (CSL) 0.0085
Family DNA-binding protein LAG-1 (CSL) 0.012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_002680788.1.8020
Sequence length 308
Comment predicted protein [Naegleria gruberi strain NEG-M]; AA=GCF_000004985.1; RF=representative genome; TAX=5762; STAX=5762; NAME=Naegleria gruberi; strain=NEG-M; AL=Scaffold; RT=Major
Sequence
MMVDMVLAVSDSYEFHKQNLLLNPEHYSVLMRILGPRVITLLQEKFGARIYYNTMVDLDD
IHTGVRSPFLFKYGVIKAQHLIKDLNNWETLYVSGRLQKPTFTIDTIDENVRSLPGHVDT
WHQNICLAQEHNLEHALFTALKIILSENQLTNGTDQEQDIKINLFDLFVMIASLSYQGDV
RMKIKGAENKNKVTNIVTTNYEHFIELYEPIMEKSKLSIKLDPDTKQSYVNITKSDVEKV
RGRDLPLNVQQQLSNQSKITADSIQQAIAKIVSSSSTSQTLKGLISAGPVKSFHYVLEKL
KKGLKSHK
Download sequence
Identical sequences D2V541
XP_002680788.1.8020 jgi|Naegr1|64006|fgeneshNG_pg.scaffold_8000243

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]