SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_003082608.1.19543 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  XP_003082608.1.19543
Domain Number - Region: 786-864
Classification Level Classification E-value
Superfamily beta-sandwich domain of Sec23/24 0.000188
Family beta-sandwich domain of Sec23/24 0.048
Further Details:      
 
Domain Number - Region: 355-400
Classification Level Classification E-value
Superfamily Hairpin loop containing domain-like 0.0667
Family Pan module (APPLE domain) 0.069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_003082608.1.19543
Sequence length 1990
Comment unnamed protein product [Ostreococcus tauri]; AA=GCF_000214015.2; RF=representative genome; TAX=70448; STAX=70448; NAME=Ostreococcus tauri; strain=RCC4221; AL=Chromosome; RT=Major
Sequence
MADDEFADSRFDGTNCEAFNGGALRVDAYAWSSSASESMLQVGVDAIDGRVALETYASAL
ISNDADKKLVRSNDDDTSFQTPDFTPGDFEFTCWGAQIINPSGARRLVDCGDVRIEMNDV
GPRIVFGSNVALNVGEFLAGGYSNFLFSFRDSQMREMDVDSIRALEPTCDASVFSTFAPE
NVNVALTSTFGWNPNAMIVLSACPSLLDVVFSTLTASVDGAGASVHGVVGHRSCGTLDAS
KVAFAIDLGGEYDETQLESACDGVQVVYPISSVPPADTRASCDVVATERGIELRFGDGLV
LCPGCFIVGSRNSVMFSMTYTDSREFSGTTISSNDLSQPICTGFPRGGGSTNDVVRPCNE
EDNAEYEGSRITEGLFLVPSPEACCLACRENPNCNVWTFCTADDGCGRSEFAYSYSACEL
KYAAPQIITQDIIPGKRGAEVTYISGAIKDKTTEPVPFDTSSERKECRAEANANYDGIQI
SIVNAVSWSACCDACLADSSCAVWNFCDETGGCDGEFAYQTCILKIFLVGGDPRNPPAIA
RGEGVPWISGSLAERIPEPPPSIEGCKVERNANYKGHPLNSGSDLILDDETECCAECKKT
KKCTAWVFCAAPGGCGNEYYEYTFGECWLKHLGRNDLAQAPIPAWERGFNVTTTSATCAD
SFAVASTGTAGASFAVASTGTVGASFAVASTGTVGASFAAATRLLADVRSRCKSFFGGQN
DGVFDQSCCDIVRGMNVERCFCDRATIDALGEDLRVIEIAVPALCESGLEVVSGLGCVSS
PPPSPPPPNPPPLPSPPPPSPPPPSPTPPLPPPPSPFPPPSPSPSPPPPSPPPPSPPPPS
PPPPSPFPPPAPPPPSPPPADECPNLKVVGGLDAVQNEVLLNSVYVDRGAVATDDIDGDI
SNEIDVDTSDVDTSRVGTYRVVYRIRDSGGCDVMAERLVRVIALVPTSDFAQLTSLCVSN
IPRVQELCVGISAAGKGAPNPASFPSCCVALSDLDEAGCFCVPEFIREFEGVQVSVGEVA
AFSPLACGFRIKVGDVCEDQQLLSQFLSTPTAVPDFVISNEDWIRIVDEGGSLREDVSCA
DTLTVTQKYCSAIQQNVGVIPRVSDFGPCCATAERLYNNSCLCDEGFKLITDENLIFLRE
FVGFTPLACGFNFTEDCPALADELGIQTIAVEIPVDNGTIPIGPTTPITRPLEGYGVVVE
NGQIVPTDAPGRSECDTVRELKNFLVPSSRPNAKEYDVLGAIGCCANATIYIPEVTVVIA
YRPLDGSSNVFVDALSVPTVKCNGLTLISSRGEVLDDTLCDRATIQENIDSVEITLTDLT
IPADAAITGRVRDGKLFTVNHGSEATLNALAPVVKALQCDVGGTWADALPPVQQDATRRK
LLQFFGGIPFFPEPNQLNVTEGPSPVRPLNGFNLTQYARPSFRPHSDTGAGDFAEGDEED
DQPFTLQCQDFLSRVRASLRWFGKRVDVNGNYRVAPFERYEFRGSIGIDERGSALTLTDV
NVPIVLSAWVNANGTWNEVQNPVDEYGIECNFPRVVGDSSQDQNDDPCGRLQFFMASYTP
DGVFRNDGRPSPKVILLEVSFSQVVLCPGCKLQGDGENDALFTVFSRTGSRFDYIGPSVG
QPTCVRDLRGQPVQPVAATPGGPTPTPTPTPTPMPIPTPVPPRPVPPTTGPQCNGEKGLN
LKGILLRDGSKFIVDSEDECCLACWQTRDCDTWVYCTGNCVDFAYHSCWLKRSIGGGYTA
ERGPTEIAAWDRGPDIPWTSGWFPRRTFPQTPPSRRWRHLFHHRNLHRNRLRHPGGDHHD
NTWCEFENLSGQCAPEDVTVCPSESAPKRLREADTRLSLQLLPGEGALQAIVTGTAINFG
RIVSNSVCLNGLSVTLPFDRTVIDVSSEQSRVAPPEEFTIDCIFIGVRSRDGPPRDDANG
CNVYARAEVTDSGVQVNFLNIALCSECWLVGGPSSALFVVRHIEGSTLTLPEASVTNTNV
FTEDAAFCSP
Download sequence
Identical sequences jgi|Ostta4|36165|1300010137 XP_003082608.1.19543 70448.Q00X46

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]