SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_004375337.1.4749 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_004375337.1.4749
Domain Number 1 Region: 370-421,450-653
Classification Level Classification E-value
Superfamily Clavaminate synthase-like 1.35e-39
Family PhyH-like 0.074
Further Details:      
 
Domain Number 2 Region: 77-193
Classification Level Classification E-value
Superfamily ARID-like 4.19e-29
Family ARID domain 0.0011
Further Details:      
 
Domain Number 3 Region: 307-365
Classification Level Classification E-value
Superfamily FYVE/PHD zinc finger 2.11e-16
Family PHD domain 0.0028
Further Details:      
 
Domain Number 4 Region: 1155-1224
Classification Level Classification E-value
Superfamily FYVE/PHD zinc finger 0.000000000000113
Family PHD domain 0.011
Further Details:      
 
Domain Number 5 Region: 1472-1538
Classification Level Classification E-value
Superfamily FYVE/PHD zinc finger 0.00000000000226
Family PHD domain 0.0034
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_004375337.1.4749
Sequence length 1544
Comment PREDICTED: lysine-specific demethylase 5B [Trichechus manatus latirostris]; AA=GCF_000243295.1; RF=representative genome; TAX=127582; STAX=9778; NAME=Trichechus manatus latirostris; AL=Scaffold; RT=Major
Sequence
MEPATVLPSGPRPALSLGGPGPLGEFLPPPECPVFEPSWEEFADPFAFIHKIRPIAEQTG
ICKVRPPPDWQPPFACDVDKLHFTPRIQRLNELEAQTRVKLNFLDQIAKYWELQGSTLKI
PHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATRMGFAPGKAVGSHIRGHYERILN
PYNLFLSGDSLRCLQKPNLTTDTKDKEYKPHDIPQRQLVQPLETCPPARRAKRMRAEAMN
IKVEPEETPEAKTHNLRRRMGCPTLKCENEKEMKSNIKQEPIEKKEYIVESEKEKPKSRS
KKTTNAVDLYVCLLCGSGNDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKCLAQE
CNKPQEAFGFEQAARDYTLRTFGEMADAFKSDYFNMPVHMVPTELVEKEFWRLVSTIEED
VTVEYGADIASKEFGSGFPVRDGRIKLSPEEEEYLDSGWNLNNMPVMEQSVLAHITADIC
GMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPGYAAEQLENVMKKLAPE
LFVSQPDLLHQLVTIMNPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAV
NFCTVDWLPLGRQCVEHYRLLHRYCVFSHDEMICKMASKADVLDVVVASTVQKDMAIMIE
DEKALRETVRKLGVIDSERMDFELLPDDERQCIKCKTTCFMSAISCSCKPGLLVCLHHVK
ELCSCPPYKYKLRYRYTLDDLYPMMNALKLRAESYNEWALNVNEALEAKINKKKSLISFK
ALIEESEMKKFPDNDLLRHLRFVTQDAEKCASVAQQLLNGKRQTRYRSGGGKSQNQLTVN
ELRQFVTQLYALPCVLSQTPLLKDLLNRVEDFQQHSQKLLSEEMPSAAELQDLLDVSFEF
DVELPQLAEMRVRLEQARWLEEVQQACVDPNSLTLDDMRRLIDLGVGLAPYSAVERAMAR
LQELLTVSEHWDDKAKSLLKARPRHSLSSLAAAVKELEEIPAYLPNGAALKDSVQRARDW
LQDVEALQAGGRVPVLDTLIELVTRGRSIPVHLNSLPRLELLVAEVQAWKECAANTFLTE
NSPYSLLEVLCPRCDIGPLGLKRKQRKLKEPLPSGKKRSTKLENLSDLERALTESKETAS
AMATLGEARLREMEALQSLRLANEGKLLSPVQDVEMKVCLCQKAPAAPMIQCELCRDAFH
TTCVAVPSISQGPQVWLCPHCRRSEKPPLEKILPLLASLQRIRVRLPEGDALRYMIERTV
NWQHRAQQLLSSGNLKFVQDRVGSGLLYSRWQASAGQVSETNKVSQPTGTTSFSLPADWD
SRTLYLHSPFSTGRSCIPLQGISPEVNELLMEAQLLQVSLPEIQELYQTLLAKPSPAQQT
DRSSPVRPSSEKNDCCRGKRDGINSLERKLKRRLEREDLSSERWDRIKKMRTPKKKKIKL
SHPKDMNNFKLERERSYELARSAETHSLPSDTSYSEQEDSEDEDAICPAVSCLQPEGDEV
DWVQCDGSCNQWFHQVCVGVSPEMAEKEDYICVRCTVKDAPSRK
Download sequence
Identical sequences XP_004375337.1.4749

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]