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  Home > Genomes > NCBI 2017_08 genome > XP_004384584.1.4749

Domain assignment for XP_004384584.1.4749 from NCBI 2017_08 genome

Domain architecture

Domain assignment details

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Strong hits

Sequence:  XP_004384584.1.4749
Domain Number 1 Region: 1789-2034
Classification Level Classification E-value
Superfamily Ankyrin repeat 3.54e-54
Family Ankyrin repeat 0.0000000653
Further Details:      
 
Domain Number 2 Region: 579-708
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.00000000000173
Family Growth factor receptor domain 0.0091
Further Details:      
 
Domain Number 3 Region: 397-520
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.00000000000235
Family Growth factor receptor domain 0.016
Further Details:      
 
Domain Number 4 Region: 807-939
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.00000000000267
Family Growth factor receptor domain 0.0073
Further Details:      
 
Domain Number 5 Region: 1065-1175
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.0000000000152
Family Growth factor receptor domain 0.011
Further Details:      
 
Domain Number 6 Region: 516-558
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000000409
Family EGF-type module 0.0061
Further Details:      
 
Domain Number 7 Region: 1140-1261
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.000000000863
Family Growth factor receptor domain 0.012
Further Details:      
 
Domain Number 8 Region: 936-1051
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.0000000013
Family Growth factor receptor domain 0.012
Further Details:      
 
Domain Number 9 Region: 245-292
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000000251
Family EGF-type module 0.014
Further Details:      
 
Domain Number 10 Region: 167-204
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000000536
Family EGF-type module 0.004
Further Details:      
 
Domain Number 11 Region: 283-322
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000218
Family EGF-type module 0.0055
Further Details:      
 
Domain Number 12 Region: 1259-1309
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000322
Family EGF-type module 0.012
Further Details:      
 
Domain Number 13 Region: 1349-1385
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000643
Family EGF-type module 0.034
Further Details:      
 
Domain Number 14 Region: 208-249
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000687
Family EGF-type module 0.0051
Further Details:      
 
Domain Number 15 Region: 1479-1512
Classification Level Classification E-value
Superfamily Notch domain 0.0000000798
Family Notch domain 0.0035
Further Details:      
 
Domain Number 16 Region: 49-87
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000166
Family EGF-type module 0.033
Further Details:      
 
Domain Number 17 Region: 320-360
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000179
Family EGF-type module 0.0081
Further Details:      
 
Domain Number 18 Region: 744-780
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000196
Family EGF-type module 0.017
Further Details:      
 
Domain Number 19 Region: 362-404
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000393
Family EGF-type module 0.017
Further Details:      
 
Domain Number 20 Region: 1397-1429
Classification Level Classification E-value
Superfamily Notch domain 0.000000863
Family Notch domain 0.0013
Further Details:      
 
Domain Number 21 Region: 130-171
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000000984
Family EGF-type module 0.019
Further Details:      
 
Domain Number 22 Region: 1437-1469
Classification Level Classification E-value
Superfamily Notch domain 0.0000017
Family Notch domain 0.0059
Further Details:      
 
Domain Number 23 Region: 783-818
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000002
Family EGF-type module 0.032
Further Details:      
 
Domain Number 24 Region: 701-741
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000628
Family EGF-type module 0.01
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_004384584.1.4749
Sequence length 2329
Comment PREDICTED: neurogenic locus notch homolog protein 3 [Trichechus manatus latirostris]; AA=GCF_000243295.1; RF=representative genome; TAX=127582; STAX=9778; NAME=Trichechus manatus latirostris; AL=Scaffold; RT=Major
Sequence 
MDLEGRGPSRCPGSRDALEAQRWARWGGGGNGLPGPAPGAEIWAVAGRTSPCLDGSPCVN
GGRCTQLPTREAACLCPPGWVGERCQLEDPCHSGPCAGRSVCQSSVVAGTARFSCRCPRG
FRGPDCSLPDPCLSSPCAHGARCSVGPDGRYVCSCPTGYQGRSCRSDVDECRGGGPCHHG
ATCLNTPGSFHCQCPAGYLGPLCESPAVPCAPSPCRNGGTCRQSGEYAYDCACLPGFEGQ
NCEVNVDDCPGHRCLNGGMCVDGVNTYNCQCPPEWTGQFCTEDVDECQLQPNACHNGGTC
FNTLGGHSCVCVNGWTGESCSQNIDDCATAVCFHGATCHDRVASFYCACPMGKTGLLCHL
DDACVSNPCHEDAICDTNPVNGRAICTCPPGFTGGACDQDVDECSIGANPCEHLGRCVNT
QGSFLCQCGRGYTGPRCETDINECLSGPCRNQATCLDRIGQFTCICMAGFTGTFCEMDID
ECQSSPCVNGGVCKDRVNGFSCTCPSGFSGATCQLDVDECASTPCRNGAKCVDQPDGYEC
RCAEGFEGTLCERNIDDCSPDPCHHGRCVDGIASFSCACAPGYTGTRCESQVNECRSQPC
RHGGKCLDLVDKYLCRCPPGTTGVNCEVNIDDCASNPCTFGICRDGINRYDCVCQPGFTG
PLCNVEINECASSPCAEGGSCVDGENGFRCLCPPGSLPPLCLPPSHPCAQEPCSHGVCHD
APGGFRCVCEPGWSGPRCDQSLAQDACDSQPCRAGGTCTSEGVGFRCICPPGVQGRQCEL
PSPCTPNPCENGGHCESASSQLAVCSCPPGWQGPRCQQDVDECAGSSPCGPHGTCTNLAG
TFGCTCHGGYGGPSCDQDIDDCDPNPCLNGGLCQDGVGSFSCSCLPGFAGPRCARDVDEC
LSSPCGPGTCTDHVASFTCTCPPGYGGFHCEWDLPDCSPSSCFNGGTCIDGVTSFSCLCR
PGYTGAHCQHQVDPCLSRPCLNGGVCSAAHPGFHCACPQGFTGSQCQTLVDWCSRVPCQN
GGRCTQTGASFYCLCPSGWSGRLCDIQSLPCREAAAHIGVRPEQLCQAGGRCVDEGSAHY
CLCPEGRTGSHCDQEVDPCLAQPCQHGGTCRGYMGGYMCECPAGYTGDDCEDDVDECSSQ
PCQHGGSCIDLVARYLCSCPPGTLGVLCEINEDDCGLGLSQEQGPLCLHNGTCVDLVGGF
RCTCPPGYTGLRCEADINECRPGTCHSAHTRDCLQDPGGGFHCLCHAGFTGLRCQTVLSP
CESQPCQHGGQCSPSSGQGGALTFICHCVPPFWGPRCERVARSCRELQCPVGVPCQQTVR
GPRCACPPGLSGPSCRGSRGSPPGATNASCAAAPCLHGGSCRPAPLAPFFLCSCAPGWAG
QRCEAPAELPEAPEEPRCPLAACRTKRGDRRCDRECNSPGCGWDGGDCSLSVGDPWRQCA
ALQCWRLFNNSRCDPACSSPACLYDNFDCHTGGGRERTCNPVYEKYCADHFADGRCDQGC
NTEECGWDGLDCAVEVPALLARGVLVLTVLLPPDELLRSSADFLQRLSAILRTSLRFRLD
GNGQAMVFPYHRPSPAPRTRRELVPEVIGSVVMLEIDNRLCLQSPENDHCFPDAQSAADY
LGALSAVERLDFPYPLRAVRAEPLELPEPSVPLLPLLAAGAVFLLVILVLGVMVARRKRE
HSTLWFPEGFALHKDTAAGHKGRREPVGQDALGMKNMAKGDSLMGEVASEWMDTECPETK
RLKVEEPSVGAEDAVDCRQWTQHHLVAADIRMAPAMALTPPQGDVDADGMDVNVRGPDGF
TPLMLASFCGGALEPMPAEDDEADDTSASIISDLICQGAQLGAQTDRTGETALHLAARYA
RADAAKRLLDAGADTNAQDHSGRTPLHTAVTADAQGVFQILIRNRSTDLDARMADGSTAL
ILAARLAVEGMVEELIASHADVNAVDELGKSALHWAAAVNNVEATLALLKNGANKDMQDS
KEETPLFLAAREGSFEAAKLLLDHFANREITDHLDRLPRDVAQERLHQDIVRLLDQPSGP
RSPPGPHGLGPLLCPPGAFLPGLKAAPSGGKKSRRPPGKAGLVPQGTRGRGKKLTLACPG
PLADSSVTLSPVDSLDSPRPFGGPPASPGGFSLEGPYVAATATAVSLAQLGGAGRVGLGR
QPPGGCVLSLGLLNPVAVPLDWARLPPPAPPGPSFLLPLAPGPQLLNPGTPVSPQERPPP
YLAALGHSEEYAAAGPHSSPRKAHFLRVPSEHPYLTPSPESPEHWASPSPPSLSDWSDST
PSPATASGATAAGTLPAQTLSLTVPGPLTQTQTQVGSHPEVPPKRQVLA
Download sequence
Identical sequences XP_004384584.1.4749

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.