SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_004562844.1.88231 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_004562844.1.88231
Domain Number 1 Region: 389-618
Classification Level Classification E-value
Superfamily VPS9 domain 2.62e-42
Family VPS9 domain 0.0012
Further Details:      
 
Domain Number 2 Region: 15-101
Classification Level Classification E-value
Superfamily SH2 domain 0.000000318
Family SH2 domain 0.0048
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_004562844.1.88231
Sequence length 728
Comment PREDICTED: ras and Rab interactor 2 isoform X2 [Maylandia zebra]; AA=GCF_000238955.2; RF=representative genome; TAX=106582; STAX=106582; NAME=Maylandia zebra; ecotype=Mazinzi reef; AL=Scaffold; RT=Major
Sequence
MVGLAAALAGNSFLVVRDSVTSQPSLLCVSAGAQNEEVFDYNIKCTGAVFQLSESHLSFS
DLTQLVLFYSLTRDVLDVCLHIPRWIYSVTDTKKERLSQLEPKTWLSTPPDQQTDQMSQR
EPSSMMCSIQLTSTNGALCIINPLYLREHGDEWLTHRPAAAQPSNFRRLSTTRQWAGAGL
QSKRAISLEQETPAPNTESSGLIRACSADSAPTEQTPAGVVLRRPSRDLVIAQPQRVSTG
SLPSSTSSTPRNGTPELQRHSSPVPQSPHRVSWIEDGVWLPPPRPSSLLQPPSLELDSLS
ISSIEEEMEPQMLSSSHHHASAHRLADKVLHRLSAVGQALGGLVSQRKRLSNRVQELSEK
KGAAFAEAVKGFVEMTSKRGTDSSGVTGSEFLQEVRLSLTSLRETLLEYAEIQMLLESIT
DLNDSEIDTLVELSIHKVALKPVSSHLYSCIETSRTNDGTFERLQSNLRLLEKNEVTELG
GSAGVGVPDSVTLDRIQQKWNNMHDVYSPNKKVEIMLKVCKSIYHSMSANASSAGKVYGA
DDFLPCLTWVLLRSNLVTLQVDTDYMMELLDPTQLQGEGGYYLTTLYASLYYISSFRPRL
AARQLSVEAQQSLNQWHRRRTLHCNQSRRSKHRRTIRRQVCRDGSKDESKNENASVSMEG
SQEQKERNTEALQTLSEETGREQGANDQSQPTSPTSDSQPVTQEEETASKQEDSQTSGEG
KEEDHRAL
Download sequence
Identical sequences XP_004562844.1.88231

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]