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Domain assignment for XP_004591658.1.84141 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_004591658.1.84141
Domain Number 1 Region: 46-133
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 1.56e-36
Family SCAN domain 0.0000647
Further Details:      
 
Domain Number 2 Region: 956-1012
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.66e-25
Family Classic zinc finger, C2H2 0.0038
Further Details:      
 
Domain Number 3 Region: 899-956
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.18e-22
Family Classic zinc finger, C2H2 0.0041
Further Details:      
 
Domain Number 4 Region: 861-913
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 6.43e-20
Family Classic zinc finger, C2H2 0.0053
Further Details:      
 
Domain Number 5 Region: 757-808
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000000000000305
Family Classic zinc finger, C2H2 0.0063
Further Details:      
 
Domain Number 6 Region: 688-739
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.000000000198
Family Classic zinc finger, C2H2 0.012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_004591658.1.84141
Sequence length 1031
Comment PREDICTED: zinc finger and SCAN domain-containing protein 20 [Ochotona princeps]; AA=GCF_000292845.1; RF=representative genome; TAX=9978; STAX=9978; NAME=Ochotona princeps; AL=Scaffold; RT=Major
Sequence
MAVVLDSRSQASPPPEPEDLLIVKLEEDSWDSEPKLLERHHEPVPGPEASRRRFRQFQYR
DAAGPHEAFSQLWALCCHWLRPEIRLKEQILELLVLEQFLTILPREVQTWVQARHPESGE
EAVALVEDWHREARAAGRRELELCAKEAKSLKAVRESQSFQLQAVDHWPEGPSQKQWMKN
SCRDVPKHLNPKMAPQPLKESAILTPQVPALPKVGSVGDWEVTVESQEALGPGKQVEKEF
CEDTVGDDCGDHVCLGVPVSKASITSQQEQGSEFWGLSLVNSTKRNSADDILDNEQTKAA
PALAWKDSKAWEEQCQWDVEDMKVSGVHWGYEETKTFLAILSESPFSEKLRTCHQNRQVY
RAIAERLRARGFLRTLEQCRYRVKNLLRNYRKAKSSHPPGTCPFYEELEALVRSRMTVRA
TGGPGEAMALPRLGDSDAEMDEQEERGWEPEETAECCNGAGPATDESSQGHKISGHPTLL
QSRIAGVHWGYEETKAFLAILSESPFSEKLRTCHQNSQVYRAIAERLCALGFLRTLEQCR
YRFKNLLRSYRKAKSSHPPGTCPFYEELDSLMRARIAVRALGAVRESTGGHMEAGSVEVW
GEVAGGDAMRAKTPDTGFEMRCEDEDETWEQDILEESPGHLSQCIPDAVCRAHDWGEDSD
HENSGEGELEDPPEEQWEECSSEEDLEKLIDHRGLYLAEKPYKSDTCVKSFSRSSHFLAH
QQVHTNEKAHKRLVCGKGFHDCSDLSTYQGLHTGQQPYKCLEYEQSFSDHSSLVTHQRIH
VGEKPHQCGECWESFNQSSNLLKHQRVHWGGDPEQRSEPGERLGRSPSRSAHWRSSTGET
TPEEAPSSRKSLPPSTHLEEKLYQCSECGRSFSKSSALISHQRIHTGEKPYECGECGKSF
SKSSTLANHQRTHTGEKPYKCVDCGKCFSERSKLITHQRVHTGEKPYKCLECGKFFRDRS
NLITHQRIHTGEKPYRCRECGKCFNQSSSLIIHQRTHTGEKPYKCTECGKDFNNSSHFSA
HRRTHTAGKAS
Download sequence
Identical sequences XP_004591658.1.84141

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