SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_004613233.1.94378 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_004613233.1.94378
Domain Number 1 Region: 286-383
Classification Level Classification E-value
Superfamily tRNA-intron endonuclease catalytic domain-like 3.49e-25
Family tRNA-intron endonuclease catalytic domain-like 0.0024
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_004613233.1.94378
Sequence length 415
Comment PREDICTED: tRNA-splicing endonuclease subunit Sen2 [Sorex araneus]; AA=GCF_000181275.1; RF=representative genome; TAX=42254; STAX=42254; NAME=Sorex araneus; AL=Scaffold; RT=Major
Sequence
MAEAIFRAPKRKRRVYESFEGPLPLPLGPRKDFRLFRAELQDGNVMVRDVVEMEQLYGKG
YFGKGVFSRSRPRLAVSDPKLAARWKDVKTNMPIITSEKYRRGLEWAAERLRRQGRDESA
VQSALRDLARPCALPGAGGCSEPELPAEPDARRPGTEAPATKNSQSSAAADGEGPGQDPQ
TPNGLAGCRDAAPAPLAPALPAAGAPQGPSDEFVLVDESQEAPGGDLGQARGLVCRRNPY
RTPEYLQLSREEAFFLVYALGCLSVYQEEEPLTILQLWGVFTAAQPSFRTTYMAYHYFRS
KGWVPKVGLKYGTDLLLYRKGPPFYHASYSVIVELVDDERFQGPPRRPLSWKALAALSRV
SVNVSKELMLCYLIKPASMTDADLESPECMKHIRVQEVILSRWVSSRERSDQDDL
Download sequence
Identical sequences XP_004613233.1.94378

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]