SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_004688704.1.23501 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_004688704.1.23501
Domain Number 1 Region: 19-204,298-335
Classification Level Classification E-value
Superfamily Concanavalin A-like lectins/glucanases 1.38e-63
Family Calnexin/calreticulin 0.0000909
Further Details:      
 
Domain Number 2 Region: 206-291
Classification Level Classification E-value
Superfamily P-domain of calnexin/calreticulin 1.06e-22
Family P-domain of calnexin/calreticulin 0.00018
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_004688704.1.23501
Sequence length 385
Comment PREDICTED: calreticulin-3 isoform X1 [Condylura cristata]; AA=GCF_000260355.1; RF=representative genome; TAX=143302; STAX=143302; NAME=Condylura cristata; AL=Scaffold; RT=Major
Sequence
MAAPVVALWAFCVLRVVLATVYFQEEFLDGERWRNRWVQSANDSQFGHFRLSSGKFYGHK
EKDKGLQTTQNGRFYAISARFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKIFPADVDQK
KLNGKSQYYIMFGPDICGFDIKKVHVILHFKNQYHANKKSIRCKVDGFTHLYTLILRPDL
TYEVKIDSQVIESGSIEYDWNLTSLKKMEKSSVESKDWDQEKDDKSQDWEKHFLDASASK
PSDWNSELDGDWQAPMLQKPPYQDGLKPEGIDKDVWLHQKLKNTNYLTEYDLSEFENIGA
IGLELWQVRSGTIFDNFLITDDEEYAENFGRATWGETKDPEREMDAIQAKEEVKKAREED
EEELLIGRFGGQGNHFNRFHRKDEL
Download sequence
Identical sequences XP_004688704.1.23501

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]