SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_004705044.1.18182 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_004705044.1.18182
Domain Number 1 Region: 47-134
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 2.24e-36
Family SCAN domain 0.0000835
Further Details:      
 
Domain Number 2 Region: 971-1027
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 4.04e-26
Family Classic zinc finger, C2H2 0.0034
Further Details:      
 
Domain Number 3 Region: 747-804
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 4.1e-25
Family Classic zinc finger, C2H2 0.0039
Further Details:      
 
Domain Number 4 Region: 914-971
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.3e-22
Family Classic zinc finger, C2H2 0.0043
Further Details:      
 
Domain Number 5 Region: 709-761
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 6.36e-19
Family Classic zinc finger, C2H2 0.0067
Further Details:      
 
Domain Number 6 Region: 876-928
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 4.8e-17
Family Classic zinc finger, C2H2 0.0062
Further Details:      
 
Domain Number 7 Region: 789-841
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.000000000000195
Family Classic zinc finger, C2H2 0.005
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_004705044.1.18182
Sequence length 1046
Comment PREDICTED: zinc finger and SCAN domain-containing protein 20 [Echinops telfairi]; AA=GCF_000313985.1; RF=representative genome; TAX=9371; STAX=9371; NAME=Echinops telfairi; AL=Scaffold; RT=Major
Sequence
MAVALEFQAQDSPLPEPEGLLIVKLEEDSWGSEPKSQEEEPQQPVPVSEASRQRFRQFQY
RDAAGPHEAFSQLWELCCRWLRPEIHLKEQILELLVLEQFLKILPREAQSWVQARHPESG
EEAVALVEDWHREAHAAQQQELESYAETRSLKAMQETQSFQLQPADHWPEGQAQKQWTKN
PDSDLPKYLNAKVVPQSLQESTVLTPRASALLKMGHISDWEVAPESQKALGPREEESLKE
PPRGDCGTSVSLGVLSSKPNSICRREQAPAFWGTSLITSGKRSTAGDYSVGHEQARPAQA
LAWRAARPWDEQYQCAVEDMKVSGVHWGYEETKTFLAILSESPFSEKLRTCHQNRQVYRA
IAERLRARGFLRTLEQCRYRVKNLLRNYRKAKSSRPPGTCPFYEELEALVRARSAIRATE
RPGGAVALPRLGDSDVEVDEQEEGGWEPEETAEDCNGDDLASDESVPGPRIPGGPALFQS
RIAGVHWGYEETKAFLAILSESPFSEKLRTCHQNSQVYRAIAERLCALGFLRTLEQCRYR
FKNLLRSYRKAKSSRPPGTCPFYEELDSLMRARTSVRAIGTLREAACFLRSGPNSTKADD
QEAWDEMGDEDAINPPAPCPKTLDTGFELRHEDEDQILEQDIFEDLPGGLSKCTTEDACQ
TYDWEEESDNENEGERQWGNPLQEQWEKSSSEEDLEKLIDHQGLYLTEKPYKCDTCVKSF
SRSSHFLAHQRIHTGEKPYPCLECGKSFSDRSNLNTHQRIHTGEKPYKCPECGKSFSDHS
NLITHQRIHTGEKPYKCRECWKSFNQSSNLLKHQRIHFGGNLDHCREPGESFVQSSSFSA
HWRDSIETSPEQSPSGGSINKTLNSPGLYSTNSGEKLYQCSDCGRSFSKSSALLSHQRMH
SGEKPYDCAECGRSFSKRTTLASHQRTHTGEKPYKCGDCGKGFSERSKLITHQRVHTGEK
PYKCLECGKFFRDRSNLITHQRIHTGEKPYKCSECGKCFNQSSSLIIHQRIHTGEKPYKC
TECGKEFNNSSHFSAHRRTHVGGKAS
Download sequence
Identical sequences XP_004705044.1.18182

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]