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Domain assignment for XP_005219844.1.76553 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_005219844.1.76553
Domain Number 1 Region: 35-128
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 3.34e-36
Family SCAN domain 0.0000083
Further Details:      
 
Domain Number 2 Region: 634-690
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.96e-24
Family Classic zinc finger, C2H2 0.0055
Further Details:      
 
Domain Number 3 Region: 364-421
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 7.13e-23
Family Classic zinc finger, C2H2 0.0064
Further Details:      
 
Domain Number 4 Region: 577-634
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.02e-22
Family Classic zinc finger, C2H2 0.0075
Further Details:      
 
Domain Number 5 Region: 522-578
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.07e-21
Family Classic zinc finger, C2H2 0.0049
Further Details:      
 
Domain Number 6 Region: 675-727
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 7.3e-18
Family Classic zinc finger, C2H2 0.013
Further Details:      
 
Domain Number 7 Region: 406-458
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.71e-17
Family Classic zinc finger, C2H2 0.0071
Further Details:      
 
Domain Number 8 Region: 484-535
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.000000000000257
Family Classic zinc finger, C2H2 0.006
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_005219844.1.76553
Sequence length 734
Comment PREDICTED: myeloid zinc finger 1 isoform X1 [Bos taurus]; AA=GCF_000003055.6; RF=representative genome; TAX=9913; STAX=9913; NAME=Bos taurus; breed=Hereford; AL=Chromosome; RT=Minor
Sequence
MRPAALGSPGRASLEDEGPVTVKLEDSEEDEPAAWDLGPEAARQQFRRFRYEEAAGPGQA
LAQLRELCRQWLRPEAHSKEQMLELLVLEQFLGVLPPEIQARVRGQQPGSPEEAAALVEG
FRREPGGPRRWVTVQVQGQEVLSERTEPPDFQALPQPIPETPEPGLEMLPGATEQSTLGL
RVKEESEVTEEPEPLHPRPLSSLQGTPFTLLPDQARDCVVVLDQASPHSEPGPEVSSWRQ
HRGALWQEEAGGIFSPGFTLQMDNVSVDPDIMSAHVHLPWDLGEASLTGRLESASREGGF
SQALVPSSDLRGEPDPTEDTCQGLSHGLGAASWRAPRGRSRARGRPGTGAGAERGGRCDV
CGKVFSQRSNLLRHQKIHTGERPFVCGECGRSFSRSSHLLRHQLTHTEERPFVCADCGQG
FVRSGRLEEHRRVHTGEQPFRCAECGQSFRQRSNLLQHQRIHGDPPGPSAAPPAPPGAPE
PPGPFPCSECRQSFARRAVLLEHQAVHTGDKCFGCAECGERFGRRTVLLQHRRVHSGERP
FRCAECGQSFRQRSNLTQHRRIHTGERPFTCAECGKAFRQRPTLTQHLRVHTGEKPFACP
ECGQRFSQRLKLTRHQRTHTGEKPYRCRECGLGFTQVSRLTEHQRIHTGERPFACPECGQ
RFRQHANLTQHRRIHTGERPYACPECGKAFRQRPTLTQHLRTHRREKPFACQDCGRRFHQ
STKLIQHQRVHSAE
Download sequence
Identical sequences XP_005219844.1.76553

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