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  Home > Genomes > NCBI 2017_08 genome > XP_005316126.1.77405

Domain assignment for XP_005316126.1.77405 from NCBI 2017_08 genome

Domain architecture

Domain assignment details

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Strong hits

Sequence:  XP_005316126.1.77405
Domain Number 1 Region: 3854-4092
Classification Level Classification E-value
Superfamily Plakin repeat 1.13e-87
Family Plakin repeat 0.0000000215
Further Details:      
 
Domain Number 2 Region: 3275-3513
Classification Level Classification E-value
Superfamily Plakin repeat 7.32e-87
Family Plakin repeat 0.00000006
Further Details:      
 
Domain Number 3 Region: 12-237
Classification Level Classification E-value
Superfamily Calponin-homology domain, CH-domain 1.88e-86
Family Calponin-homology domain, CH-domain 0.000000621
Further Details:      
 
Domain Number 4 Region: 2616-2856
Classification Level Classification E-value
Superfamily Plakin repeat 3.14e-85
Family Plakin repeat 0.0000000753
Further Details:      
 
Domain Number 5 Region: 2944-3183
Classification Level Classification E-value
Superfamily Plakin repeat 4.19e-78
Family Plakin repeat 0.000000424
Further Details:      
 
Domain Number 6 Region: 3612-3849
Classification Level Classification E-value
Superfamily Plakin repeat 9.81e-77
Family Plakin repeat 0.000000866
Further Details:      
 
Domain Number 7 Region: 4165-4206,4241-4436
Classification Level Classification E-value
Superfamily Plakin repeat 4.1e-70
Family Plakin repeat 0.000000301
Further Details:      
 
Domain Number 8 Region: 253-369
Classification Level Classification E-value
Superfamily Spectrin repeat 4.89e-24
Family Spectrin repeat 0.0042
Further Details:      
 
Domain Number 9 Region: 1127-1312
Classification Level Classification E-value
Superfamily Spectrin repeat 1.3e-20
Family Spectrin repeat 0.0053
Further Details:      
 
Domain Number 10 Region: 593-695
Classification Level Classification E-value
Superfamily Spectrin repeat 4.68e-17
Family Spectrin repeat 0.0053
Further Details:      
 
Domain Number 11 Region: 427-591
Classification Level Classification E-value
Superfamily Spectrin repeat 0.0000000000265
Family Spectrin repeat 0.0044
Further Details:      
 
Domain Number 12 Region: 4112-4160
Classification Level Classification E-value
Superfamily Plakin repeat 0.000000000228
Family Plakin repeat 0.0093
Further Details:      
 
Domain Number 13 Region: 700-778
Classification Level Classification E-value
Superfamily Spectrin repeat 0.0000677
Family Spectrin repeat 0.011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_005316126.1.77405
Sequence length 4517
Comment plectin isoform X22 [Ictidomys tridecemlineatus]; AA=GCF_000236235.1; RF=representative genome; TAX=43179; STAX=43179; NAME=Ictidomys tridecemlineatus; AL=Scaffold; RT=Major
Sequence 
MDPSRAIQHEISSLKDERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEV
LSGDNLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIIL
HFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKP
MLIDMNKVYHQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAM
PRVPGAQDGVRANELQLRWQEYRELVLLLLQWIRHHTAAFEERKFPSSFEEIEILWCQFL
KFKETELPAKEADKNRSKGIYQSLEGAVQAGHLKVPPGYHPLDVEKEWGKLHVAILEREK
QLRSEFERLECLQRIVSKLQMEAGLCEEQLNQADALLQSDVRLLASGKGPQRAGEVERDL
DKADGMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHERLVAIRTEYNLRLKAGVAAPVTQ
VTLQSTQRRPEVEDSTLRYLQDLLAWVEENQRRVDSAEWGVDLPSVEAQLGSHRGLHQSI
EEFRAKIERARSDEGQLSPASRGAFRDCLGRLDLQYAKLLNSSKARLRFLDSLHGFVAAA
TKELMWLNEKEEEEVGFDWSDRNANMAAKKESYSALMRELELKEKKIKEIQNTGDRLLRE
DHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENTAYFQFFSDVREAEEQLQKLQETL
RRKYSCDRSITVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAIVQLKPRNPAYPIRG
HVPLLAVCDYKQVEVTVHKGDQCQLMGPAQPSHWKVLSSSGSEAAVPSVCFLVPPPNQEA
QEAITRLEAQHQALVALWHQLHVDMKSLLAWQSLSRDVQLIRSWSLVTFRTLKPEEQRQA
LRSLELHYQAFLRDSQDAGSFGPEDRLVAEREYSSCSRHYQQLLQSLEQGEQEESRCQRC
ISELKDIRLQLEACETRTVHRLRLPLDKEPARECAQRIAEQQKAQAEVEGLGKGVARLSA
EAEKVLALPEPSPAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRSTQGAEEVL
KAHEEQLKEAQAVPSTLPELEATKAALKKLRAQAEAQQPVFDALRDELRGAQEVGERLQQ
RHGERDVEVERWRERVTQLLERWQAVLAQTDVRQRELEQLGRQLRYYRESADPLSAWLQD
AKRRQEQIQAVPMANVQAVREQLRQEKALLEEIERHGEKVEECQRFAKQYINAIKDYELQ
LVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTRYSELTTLTGQYIKFVSETLRRME
EEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQAKAQAELEAQELQRRMQEEVARRE
EAAVDAQQQKRSVQEELQHLRQSSEAELQAKARQVEAAERSRLRIEEEIRVVRLQLETTE
RQRSGAEDELQALRARAEEAEAQKRQAQEEAERLRRQVQDESQRKRQAEAELALRVKAEA
EAAREKQRAMQALEELRLQAEEAERQLRQAEAERARQVQVALETAQRSAEVELQSKRASF
AEKTAQLERTLQEEHVAVAQLREEAERRAQQQAEAERAREEAERELERWQLKANEALRLR
LQAEEVAQQKSLAQAEAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTA
QQRLAAEQELIRLRAETEQGEQQRQLLEEELARLQREAAEANQKRQELEAELAKVRAEME
VLLASKARAEEESRNTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAA
RQRAEAERVLAEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAA
QHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVEEEILALKVSFEKAAAGKAELE
LELGRIRSNAEDTLRSKEQAELEAARQRQLAAEEEQRRREAEERVQKSLAAEEEATRQRK
AALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFVVQQREQEL
QQTLQQEQSVLERLRSEAEAARRAAEEAEEAREQAEREAAQSRRQVEEAERLKQSAEEQA
QVRAQAQAAAEKLRKEAEQEAARRAQAEQAALRQKQAADAEMEKHKKFAEQTLRQKAQVE
QELTTLRLQLEETDHQKSILDEELQRLKAEVTEAARQRSQVEEELFSVRVQMEELGKLKA
RIEAENRALILRDKDNTQRFLEEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQR
VLAEKMLKEKMQAVQEATRLKAEAELLQQQKELAQEQARRLQEDKEQMAQQLAQETQGFQ
RTLEAERQRQLEMSAEAERLKLRVAEMSRAQARAEEDAQRFRKQAEEIGEKLHLTELATQ
EKVTLVQTLEIQRQQSDHDAERLREAIAELEREKEKLKQEAKLLQLKSEEMKTVQQEQML
QETQALQQSFLSEKDSLLQRERFIEQEKAKLEQLFQDEVAKAQQLREEQQRQQQQMEQEK
QQLMASMEEARRRQREAEEGVRRKQEELQHLEEQRQKQEKLLAEENQRLRERLQRLEEEH
RAALAHSEEIAATKALPNGRDAPDGPTVEVEPEHSFEGLRQRVPAQRLQEAGILSPEELQ
RLVQGHTTVAELAQRRDVQQYLQGRSSIAGLLLKPTNEKLSVYTALRRQLLSPGTALILL
EAQAASGFLLDPVRNRRLTVNEAVKEGVVGPELHHKLLSAERAVTGYKDPYTGEQISLFQ
AMKKDLIIRDHGICLLEAQIATGGIIDPVHSHRVPVEVAYQRGYFDEEMSRVLADPSDDT
KGFFDPNTHENLTYLQLLERCVEDPETGLRLLPLTDKAAKGGELVYTDSEARDVFEKATV
SAPFGKFQGKTVTIWEIINSEYFTAEQRRDLLRQFRTGRITVEKIIKIVITVVEEHEQKS
QLCFEGLRALVPAAELLESGIIDHDLYRQLQRGERSVREVAEADSVRRALRGANVIAGVW
LQEAGQKLSIYEALKKDLLQPDVAVALLEAQAGTGHIIDPATSARLTVDEAVRAGLVGPE
LHEKLLSAEKAVTGYRDPYSGQIASLFQALKKGLIPREQGLRLLDAQLSTGGIVDPSKSH
RVSLDVAYTRGHLDKETSRALLEPREDAKVYLDPSTREPVTYGQLQQRCRPDKLTGLSLL
PLSEKAARAQQEEVYSELQARETLEKATVEVPMGSFKGRTVTVWELISSEYFTEEQRQEL
LRQLRTGKVTVEKVIKILITIIEEVETKRQEQLSFTGLRAPVPASELLAARILSSAQFEQ
LKDGRTSVKDLLEVGSVRTLLQGSGCLAGIYLEDSKEKVTIYEAMRRGLLRPSTATLLLE
AQAATGFLVDPVRNQRLYVHEAVKAGVVGPELHEKLLSAEKAVTGYKDPYSGTTISLFQA
MKKGLVLREHAIRLLEAQIATGGIIDPVHSHRLPVEVAYQRGYFDEEMSRVLADPSDDTK
GFFDPNTHENLTYLQLLERCVEDPETGLRLLPLKGAEKAEVVETTQVYTEEETRRAFEET
QIDIPGGGSHGGSTMSLWEVMQSDLIPEDQRARLMADFQAGRVTKERMIIIIIEIIEKTE
IIRQQNLTSYDYVRRRLTAEDLYEARIISLETYNLLREGTKSLREALEAESAWRYLYGTG
SVAGVYLPGSRQTLTIYQALKKGLLSAEVARLLLEAQAATGFLLDPVKGERLTVDEAVRK
GLVGPELHDRLLSAERAVTGYRDPYTEQTISLFQAMKKELIPAEEALRLLDAQLATGGIV
DPRLGFHLPLEVAYQRGYLNKDTHDQLSEPSEVRSYVDPSTDERLSYTQLLRRCRRDESS
GQMLLPLSDARKLTFRGLRKQITVEELVRSQVMDEATALQLQEGLTSIEEVTKNLQKFLE
GTSCIAGVFVDATKERLSVYQAMKKGIIRPGTAFELLEAQAATGYVIDPIKGLKLTVEEA
VRMGIVGPEFKDKLLSAERAVTGYKDPYSGKLISLFQAMKKGLILKDHGIRLLEAQIATG
GIIDPEESHRLPVEVAYKRGLFDEEMNEILTDPSDDTKGFFDPNTEENLTYLQLMERCIT
DPQTGLCLLPLKEKKRERKTSSKSSVRKRRVVIVDPETGKEMSVYEAYRKGLIDHQTYLE
LSEQECEWEEITISSSDGVVKSMIIDRRSGRQYDIDDAITKNLIDRSALDQYRAGTLSIT
EFADMLSGNAGGFRSRSSSVGSSSSYPISPAVSRTQLASWSDPTEETGPVAGILDTETLE
KVSITEAMHRNLVDNITGQRLLEAQACTGGIIDPSTGERFPVTEAVNKGLVDKIMVDRIN
LAQKAFCGFEDPRTKTKMSAAQALKKGWLYYEAGQRFLEVQYLTGGLIEPDLPGRVPLDE
ALQRGTVDARTAQKLRDVSAYSKYLTCPKTKLKISYKDALDRSMVEEGTGLRLLEASAQS
SKGYYSPYSVSGSGSTAGSRTGSRTGSRAGSRRGSFDATGSGFSMTFSSSSYSSSGYGRR
YASGPSTSLGGPESAVA
Download sequence
Identical sequences XP_005316126.1.77405

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.