SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_005318353.2.77405 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_005318353.2.77405
Domain Number 1 Region: 77-232
Classification Level Classification E-value
Superfamily TRADD, N-terminal domain 3.14e-64
Family TRADD, N-terminal domain 0.000000199
Further Details:      
 
Domain Number 2 Region: 291-378
Classification Level Classification E-value
Superfamily DEATH domain 0.0000000000000118
Family DEATH domain, DD 0.0055
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_005318353.2.77405
Sequence length 382
Comment tumor necrosis factor receptor type 1-associated DEATH domain protein [Ictidomys tridecemlineatus]; AA=GCF_000236235.1; RF=representative genome; TAX=43179; STAX=43179; NAME=Ictidomys tridecemlineatus; AL=Scaffold; RT=Major
Sequence
MGFAQRQWTGSREQQGGKELPGRRDTDELGGSNGGTAPAPRRTPGSGSVQRSLAGVGTQA
RPRRAGGKMAAGPNGPEEWVGSAYLFLESLLDKVVLSDAYAHPQKKVAVFRALQTSLTES
AESPDVLQILKIHRSDPQLIVQLRFCGRQPCSRFLHVYREGTLRAKLQSCLAAALAQHSV
PLQLELRAGAERLDAWLTDEEHCLNCILAQKPDRLRDEELGELEDALCNLTCGLEGQGDN
VDVDVDVVPAPLQSLVPSPPEGKPPPLSGQTFLFQGRPVANRPLSLQDQQTFARSVGLKW
RRVGRSLQRSCRALRDPALDSLAYEYERDGLYEQAFQLLRRFVQAEGRRATLQRLVEALE
ENELTSLAEDLLGMAGPDGGLA
Download sequence
Identical sequences XP_005318353.2.77405

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]