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Domain assignment for XP_005500933.1.63277 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_005500933.1.63277
Domain Number 1 Region: 19-137,329-652
Classification Level Classification E-value
Superfamily Integrin alpha N-terminal domain 5.49e-71
Family Integrin alpha N-terminal domain 0.0000669
Further Details:      
 
Domain Number 2 Region: 157-350
Classification Level Classification E-value
Superfamily vWA-like 2.09e-50
Family Integrin A (or I) domain 0.0000000446
Further Details:      
 
Domain Number 3 Region: 655-796
Classification Level Classification E-value
Superfamily Integrin domains 3.19e-30
Family Integrin domains 0.00065
Further Details:      
 
Domain Number 4 Region: 799-928
Classification Level Classification E-value
Superfamily Integrin domains 9.94e-21
Family Integrin domains 0.0063
Further Details:      
 
Domain Number 5 Region: 959-1137
Classification Level Classification E-value
Superfamily Integrin domains 1.05e-20
Family Integrin domains 0.0079
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_005500933.1.63277
Sequence length 1171
Comment PREDICTED: integrin alpha-1 [Columba livia]; AA=GCF_000337935.1; RF=representative genome; TAX=8932; STAX=8932; NAME=Columba livia; breed=Danish Tumbler; AL=Scaffold; RT=Major
Sequence
MAASYWMLTALFHLVGSSNVDVKNAMTFSGPLEDLFGYTVQQYENEEGKWVLIGSPLVGQ
PEKRTGDVYKCPVGRDNQSPCIKLNLPASTSVPNVVEVKENMTLGTTLVTNPKGGFLACG
PLWAYKCGRLHYTTGVCSNVSSTFETIEAIAPSVQECKTQLDIVIVLDGSNSIYPWESVT
AFLNSLLKNMDIGPQQTQVGIVQYGQTVVHEFFLNTYSTTEDVMAAATRIRQRGGTQTMT
ALGIDTARKEAFTEAHGARRGVQKVMVIVTDGESHDNYRLQEVIDDCEDENIQRFAIAIL
GSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELALVTIVEALGERIFALEATTDQQA
ASFEMEMSQAGFSAHYSQDWIMLGAVGAYDWNGTVIMVKDSGISMPTNDTFRDRLSEKNE
ALAAYLGYTVNSALTPGGVLYIAGQPRYNHTGQVVIYKMEGREVQVLQRLSGEQIGSYFG
GVITTIDINRDSFTDLLLVGAPMYMGTEKEEQGKVYVYSLNKTKFEYQMSLEPIKQTCCS
PLKQDTCKVLKNEPCGARFGTAIAAVKDLNLDGYNDIVIGSPLEDDHRGAVYIYHGRGNT
ISKKYSQRIASGGDGEKVKFFGQSVHGVMDLNDDGLIDVTIGGLGGAALFWSRDVAEVNV
SMQFAPKSINIQQQNCQINKRKTICINATICFKTRLKSKEDTFESSLQYWITLDSQRQIS
RSLFTESHERKMQKNITIKDSECIKHNFYMLDKPDFQDSVRVLLEFNFSDPESGPVLDSN
LPNSISEYIPFTKDCGAKNKCISDLVLSVKASIAGDSSSPFIVKSRNDKFTIQLSVKNKG
DSAYNTRVLVQSSPNIIFAGIEDIQKDSCESNHNITCKVGYPFLKPAEEISFKISFQFNA
SYLLENATVHVYATSDSEEPPETLSDNRGHVTIPVKYEVGLIFVSVFKEHHVIIAANDTI
PTAINTTEQIGDEVTLHYRIEKGEHFPMPNLTLQILFPNVTEAKNTLLYLTALSHSQNAI
CQSSYPVDPLRISAGKPFVLPKIKEPTKDTIMDCDTYSCAYIYCALVPSDIYQVNVSLRV
WKPTIIKATIHSLTLVAKALLRSENSSLILRNDHQKVETMIKISKELPPGTVPLWVILLS
IFAGLLILALLIFALWKAGFFKRPLKKKMEK
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Identical sequences A0A2I0M584
XP_005500933.1.63277

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