SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_006271305.2.47583 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_006271305.2.47583
Domain Number 1 Region: 47-489
Classification Level Classification E-value
Superfamily Integrin alpha N-terminal domain 1.44e-97
Family Integrin alpha N-terminal domain 0.000000000669
Further Details:      
 
Domain Number 2 Region: 790-1019
Classification Level Classification E-value
Superfamily Integrin domains 5.13e-63
Family Integrin domains 0.00000615
Further Details:      
 
Domain Number 3 Region: 490-648
Classification Level Classification E-value
Superfamily Integrin domains 5.23e-46
Family Integrin domains 0.00000993
Further Details:      
 
Domain Number 4 Region: 649-783
Classification Level Classification E-value
Superfamily Integrin domains 8.89e-36
Family Integrin domains 0.0000142
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_006271305.2.47583
Sequence length 1067
Comment PREDICTED: integrin alpha-8 isoform X1 [Alligator mississippiensis]; AA=GCF_000281125.3; RF=representative genome; TAX=8496; STAX=8496; NAME=Alligator mississippiensis; AL=Scaffold; RT=Major
Sequence
MRERRHHSPPQRSPSAAARSRSRSRRMRMLLTLLLPGMLWPRGLLAFNLDEEQRSVYSGP
QGSYFGYAVDFYIPEPGTVSVLVGAPKANTTQPEIQEGGAVYYCPWPAAQCKQIPFDTTN
NRKIKVNGTREPIEFKSNQWFGATIKTHKSKVVACAPLYHWRTLKATPEKDPVGTCYVAI
QNFSAYAEYSPCRNSNADPEGQGFCQAGFSLDFYKNGDLIVGGPGSFYWQGQVITANIAD
IITDYSFKDILRKLIREKQTGVAPPSYDDNYLGYSVAAGEFTGDSEQELVVGVPRGAQNF
GYVSIINSTDLTFIQNFTGEQMASYFGYTVAVSDVNNDGLDDILVGAPLFMEREFESKPK
EVGQVYLYLQESAFYFQDAQILSGTDMFGRFGSAIAHLGDLNQDGYNDIAIGAPFAGEDR
GGKVLVYNGHSNGLNAKPSQVLSGFWASQSMPAGFGFTLRGDSDVDKNDYPDLIVGAFGA
GKVVVYRARPVVTVDAQLLLNPMIVNPENKTCQLPSSRILVACFTVRVCAAFEGQSISDK
IALKAELQLDSLKQKGAVKRTLFFDYHQSHHLFPIVIERQKRLHCQDFVVYLRDETEFRD
KLSPISVSLNYSLDESTSVDSLAVKPILNYYQESTVTEQAYILVDCGEDNLCIPDLKLSA
TPDKDQLIIGEENCVVLLINPRNDGEGAYEAELHIKIPPEADYTGVERNNKALHVLSCDY
KMENETRMVVCDLGNPMVAGTNFSTGIRFSVQHFENADFSIKFELQVKSSNKVNSSSNLV
NLQINISAVAQVQIRGVSNPPQIVLPLHNWKPKDEPTKEDDLGPLVEHIYELHNIGPGAI
NDTLLHVGWPVSNQVEFLLYILHIQTHGPLQCQTSSAINELQIKFAIQEDTPELTAFLRN
STIPHYIRRRDIKVAEPQRRSSSKILNCTNVKCLIISCIVGQLDRGTSAALKIRSRLWAQ
TFLQRKNDHYTLSSNVSFGVKKMPYKVQPAKFPEGSIAIKTSVIWATPNVSFIIPLWVII
LAILLGLLVLAILTLALWKCGFFDRARPPQDDMADREQLTNDKNTDA
Download sequence
Identical sequences XP_006271305.2.47583

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]