SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_008003666.1.81039 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_008003666.1.81039
Domain Number 1 Region: 295-391
Classification Level Classification E-value
Superfamily Retroviral matrix proteins 3.18e-32
Family MMLV matrix protein-like 0.0021
Further Details:      
 
Domain Number 2 Region: 146-244
Classification Level Classification E-value
Superfamily Immunoglobulin 1.18e-17
Family C1 set domains (antibody constant domain-like) 0.0051
Further Details:      
 
Domain Number 3 Region: 39-139
Classification Level Classification E-value
Superfamily Immunoglobulin 0.000000000000253
Family V set domains (antibody variable domain-like) 0.041
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_008003666.1.81039
Sequence length 459
Comment PREDICTED: LOW QUALITY PROTEIN: natural cytotoxicity triggering receptor 3 ligand 1 [Chlorocebus sabaeus]; AA=GCF_000409795.2; RF=representative genome; TAX=60711; STAX=60711; NAME=Chlorocebus sabaeus; AL=Chromosome; RT=Major
Sequence
MAWMAAFSACAALLLPWCPLMTAGDLKVEMMARGIQATRLNDSVTISCKVIYSQPLNITS
MGITWFRKSLTLDKEVKVFEFFGDHQKAFRPGANVSLWRLKSGDASLKLPGVQLEEAGEY
RCEVVVTPLKAQGTVQLKVVASPTSRLFQDQAVVKENEGKYMCESSGFYPKDINITWEKR
TQESPHHVVISENIITGPTIKNMDGTFNITSCLKLNSSQEDPGTVYQCVIWHESLHTPVS
IDFNLTAPRQSLSEPEKTDVSSPYWWLIPSAVGLILLIFFILXILCIRWKKMCNKSSSAY
TPLKCILKHWSSFDTQTLKKERLVFFCTWAWPSYQLQDGEAWPPEGSVNINTIQQLDIFC
RQEGKWSEVPYVQAFFALRDNPDLCECCGIYPVLLTDTSGKSTDDNSPKSEKQTPREYSD
AVPGCPSPSSPHSLGPPSATSSTTPVLPSQPPTLLLPLQ
Download sequence
Identical sequences XP_008003666.1.81039

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]