The results are sorted from lowest E-value to highest E-value. Strong classifications have a low E-value. Weak classifications have an E-value greater than 0.0001. Weak hits are shown in gray. Weak hits are not shown on the domain architecture.
The family level classification is conditional on the domain being a member of the specified superfamily. There is a possibility that the selected domain is a member of a sub-family for which no structure has yet been solved.
| Sequence: |
XP_008591549.1.73410 |
| Domain Number 1 |
Region: 645-1088 |
| Classification Level |
Classification |
E-value |
| Superfamily |
DNA/RNA polymerases |
1.78e-125 |
| Family |
Reverse transcriptase |
0.0000000000124 |
| Further Details: |
|
| |
| Domain Number 2 |
Region: 189-317 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Retrovirus capsid protein, N-terminal core domain |
2.98e-50 |
| Family |
Retrovirus capsid protein, N-terminal core domain |
0.00000473 |
| Further Details: |
|
| |
| Domain Number 3 |
Region: 1399-1557 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Ribonuclease H-like |
9.23e-38 |
| Family |
Retroviral integrase, catalytic domain |
0.0025 |
| Further Details: |
|
| |
| Domain Number 4 |
Region: 1-99 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Retroviral matrix proteins |
3.94e-31 |
| Family |
MMLV matrix protein-like |
0.0000427 |
| Further Details: |
|
| |
| Domain Number 5 |
Region: 1140-1283 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Ribonuclease H-like |
3.41e-22 |
| Family |
Ribonuclease H |
0.0064 |
| Further Details: |
|
| |
| Domain Number 6 |
Region: 509-604 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Acid proteases |
2.99e-21 |
| Family |
Retroviral protease (retropepsin) |
0.0073 |
| Further Details: |
|
| |
| Domain Number 7 |
Region: 447-487 |
| Classification Level |
Classification |
E-value |
| Superfamily |
Retrovirus zinc finger-like domains |
0.00000000207 |
| Family |
Retrovirus zinc finger-like domains |
0.0011 |
| Further Details: |
|
| |
The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by 
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Information Content (IC) is an information theoretic score measured in bits of how informative it is to assign a given ontological term to a domain archtecture. The higher the score the more informative it is to talk about the term given the domain architecture.
H-score (hypergeometric score) indicates the strength of assigning an ontological term to this domain architecture. Assignments with higher scores are of a better quality. Details for the methodology be found on the dcGO website.
| Cellular Component |
IC (bits) |
H-Score |
| Biological Process |
IC (bits) |
H-Score |
| Molecular Function |
IC (bits) |
H-Score |
