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Domain assignment for XP_009107984.1.100322 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_009107984.1.100322
Domain Number 1 Region: 1767-1885
Classification Level Classification E-value
Superfamily Bromodomain 2.88e-26
Family Bromodomain 0.0003
Further Details:      
 
Domain Number 2 Region: 655-730
Classification Level Classification E-value
Superfamily Ubiquitin-like 0.000000000000494
Family Ubiquitin-related 0.0033
Further Details:      
 
Domain Number 3 Region: 21-59
Classification Level Classification E-value
Superfamily TAF(II)230 TBP-binding fragment 0.0000000235
Family TAF(II)230 TBP-binding fragment 0.0057
Further Details:      
 
Weak hits

Sequence:  XP_009107984.1.100322
Domain Number - Region: 1385-1417
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0188
Family Retrovirus zinc finger-like domains 0.006
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_009107984.1.100322
Sequence length 1893
Comment PREDICTED: transcription initiation factor TFIID subunit 1 [Brassica rapa]; AA=GCF_000309985.1; RF=representative genome; TAX=3711; STAX=3711; NAME=Brassica rapa; cultivar=Chiifu-401-42; AL=Chromosome; RT=Major
Sequence
MAESNGSHNETSSDDEEEYEDSNRGFNLGFIFGNVDNSGDLDADYLDEDAKEHLSALADK
LGSSLPDINLLAKSDRTSDPAEQDYDRKAEDAVDYEDIDEQYDGPEVQVVSEEDHLLPKK
EYFSTPVALGSLSSRASVFDDDDYDEEEEEQEEEHAPVEKALETEESEPVVAKEDKTLEY
EKEVRILESEDHMDTNGAQEEEVDEFLEGALDEKGATPLPTLYVEDGMVILQFSEIFAIH
EPPQKRDKRENRYASYNRDKYKSMDISELVEDDEEILLKSHGGIDDDANQADLIQLDVPF
PISEGLQLVKSSTIGGITPESREFSKLGRDSCIMGELLKQDVIEDDSSLCQSQLSMEVFP
LDQHEWEHQILWENSPETSDNSGDSFESRLESLGMLVQGTNSETEQESLNVMNSGEQAQA
EKNMLVSFSANLLESFGSRGSHSGSESTNNRRHHPQLLRLESKSDEDHLSENDITGLENM
KRPESKSRFSKLALQKRDMGDEAWLDRIIWESDKELSRSQLIFDLQDEQMVFEILDNEET
KNLQLHAGAMIVSRSSKSNDEILQEGCESNSGWQFNISNDKFYMNGKSSQQLQANTNKSG
VHSLRVFHSAPAIKLQTMKNRLSNKDIANFHRPKAVWYPHDNELAIKQQGKLPSRGGSMK
IVIKSLGGKGSKLHVGIEESVSSLKAKASKKLDFKETEAVKMFYMGKELEDENSLAVQNV
QPNSLVHLVRTKVHLWPLAQKLPGENKALRPPGAFKRKADLSTKDGHVFLLEYCEERPLM
LSNAGMGANLCTYYQKSSSEDQRGNLLRNQSDTLGNVMILEPGDKSPFLGEIQPGCCQSS
VETNMYKAPVFPHRLQSTDYLLVRSPKGKLSLRRIDKIAVVGQQEPRMEVMSPGSKNLQT
YLVNRMLVYVYREFMKSHSIAADELAFLFSNLTDAVVRRNMKLCAGLKRDKNGQPCWYKR
PDFQVPPENELKKLVAPEHVCSYESMLAGLYRLKHLGITRFTLPASISAALTQLPDEAIA
LAAASHIERELQITPWNLSSNFVACTNQDRANIERLEITGVGDPSGRGLGFSFVKAAPKA
PAAAGHMKKKAAAGRGAPTVTGTDADLRRLSMEAAREVLIKFNVPDEIIAKQTRWHRIAM
IRKLSSEQAASGVKVDPTTIGKYARGQRMSFLQMQQQAREKCQEIWDRQLSSLSAYDGDE
NESENEANSDLDSFAGDLENLLDAEEGGEGEESNISKNDKLDGVKGLKMRRRPSQVETDE
EIEDEATEYAELCRLLMQDEDQKKKKKKIKAVGEGMGSFPPPRPSIGFQIAEPVRKATFI
DKNPIATQPDASFLVNESTVKDTRNWQVDSPILKTPKGKQVKDNGNSLGPLKKVKILNEN
LKVFKEKKSARENFVCGACGQYGHMRTNKHCPRYRENTDPQPEGVDMEKSVGKPSTSELS
GQAKIKPIKSSKAAPKSAIKVTVDATPKGDSSTSKTGGLPLKFRYGIPAGAMSDTLGSEA
PGSSEQAAVSDIDTGTKTTSKISKLKISSKAKPKESKVESDRPLPTYSRERGESESHKPC
VSGNQAASSRHTISILQPSLSMDRDQAESRRPHLVIRPPTEREQPQKKLVIKRSKEITDH
DMSSLEESPRFESRKTKRMAELTGFQRQQSFRVAENSLERRPKEDRVWWDEEEISRRRDY
DDMNVTEEPNEIAEIRRYEEVLRSEREEEERQKAKNKKKKKKMQPELVEGYLEDYPPRRN
NNDRRGRNVRSRYVSDFEMNGADYAPQPKRRKKGEVGLANILETIVDTLRLKEEVSGLFL
KPVSKKGAPDYFDIVKRPMDLSTIRDKVRKIEYRNREQFRHDVWQIQLNAHLYNNNGRNP
GIQPLADQLLEICDYLLEDYGDQLAEAEKGIDR
Download sequence
Identical sequences M4F349
XP_009107984.1.100322 Bra035499

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