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Domain assignment for XP_012331577.1.9421 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_012331577.1.9421
Domain Number 1 Region: 180-307
Classification Level Classification E-value
Superfamily Retrovirus capsid protein, N-terminal core domain 3.53e-34
Family Retrovirus capsid protein, N-terminal core domain 0.00087
Further Details:      
 
Domain Number 2 Region: 9-97
Classification Level Classification E-value
Superfamily Retroviral matrix proteins 7.65e-22
Family MMLV matrix protein-like 0.0075
Further Details:      
 
Domain Number 3 Region: 443-486
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000000000177
Family Retrovirus zinc finger-like domains 0.0014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_012331577.1.9421
Sequence length 513
Comment uncharacterized protein LOC105733627 [Aotus nancymaae]; AA=GCF_000952055.2; RF=representative genome; TAX=37293; STAX=37293; NAME=Aotus nancymaae; AL=Scaffold; RT=Major
Sequence
MGNHESHLDPKLPLGCLVQNLHKLGLSIKKKRLVFLSTVAWPQYSLDNQSKWPPEGTLNF
NVLTALDNFCQRNGKWSEVPYVQAFWYLRSRPALCSSSSAQVLPAKAPPLPSAPPGSALS
ENPGDLSCPARFTNPPPHVGPQLPLPSSPSPPQSPNMTSPVSACTCSHDPPICYPLREVA
GAEGVVQVHVPFSLSDLSAIEKRLGSFSTNPTAYTKEFCYLTQAYDLTWHDTYIILSSTL
TLDERDRILRAARADADQVHLTNNQMPVGAVAVPEADPDWNYQTGQDGRQRRDQMLQCLL
AGMQSTAQKVVNYDKLREITQGPTENPAAFLNRLTNAMILHTRLDPASLAGATVLATHFI
YQSAADIRKKLKKAEEGPQTPIRDLVNMAFKVFNGREEKAEATRQTRLQQKVSLQTQALV
AALRLAAHQAPGGGGPSKPGALPGRCFKCGQEGHWARQCPCPRPPTKPCPDCKRLGHWRD
ECPSGTVGSPPTPLCGGQAGLQEALELLGLLDD
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Identical sequences XP_012331577.1.9421

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