SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_012984256.1.78019 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_012984256.1.78019
Domain Number 1 Region: 63-154
Classification Level Classification E-value
Superfamily Cadherin-like 0.0000000000008
Family Dystroglycan, N-terminal domain 0.0036
Further Details:      
 
Domain Number 2 Region: 817-918
Classification Level Classification E-value
Superfamily Cadherin-like 0.00000000000152
Family Dystroglycan, N-terminal domain 0.02
Further Details:      
 
Domain Number 3 Region: 175-297
Classification Level Classification E-value
Superfamily Dystroglycan, domain 2 0.000000536
Family Dystroglycan, domain 2 0.0043
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_012984256.1.78019
Sequence length 1199
Comment PREDICTED: dystroglycan-like [Melopsittacus undulatus]; AA=GCF_000238935.1; RF=representative genome; TAX=13146; STAX=13146; NAME=Melopsittacus undulatus; AL=Scaffold; RT=Major
Sequence
MDACKDPVGTLNRFPALGSPLLLRTQVLPTFPLLFALVSVYVNTSAVVAKGSNNRHEETK
SLQEIPDATILTGKIFYYPVPVFAFQGTITQYKVTLASGADLPKWLDFNPNTNTLQGLPM
AGESGVYLLNIAASAGTHVQETPRAAGNFTIHVKDSILFLDREGSLNQMPNSFQCGKQVP
ITSAEIVVSTGAETLKAQERLFIVCTMAEYLHLDSSLLTLLQYTDLAHRGLQSLTVLVED
TGHIDFTVNHYVGLSWPVKCGAFVMLHEFIQVLQHNIDSHHLSELLGYEIAGWRILRRGN
YERESPGRQRRQLMITPTPTLKPITITQRLARGDASRPLSSAVPSSLLTQLVITSTQGLS
TFCEDSITASYKMQNNIHPTISQESLATSEMDSVWDMPAKPPVSIMFADSNFPDLSPSLI
TRTALLFTELEVRPTRASDTSLLLEQLETYMPEADSYFLYSKTEVSTYHFLQDITSDRDQ
LSRPMYTWVINTPHEQPHSSAEVFPSKKEVHVFLPAAASVSEMTDYTEEAKSHFPELEML
SSASFSPGLPSLFPKASVRATISSDVTFPIDDTYPLVLASSSLSQVFAKDHEQLFKPFMT
IPQPSGFPFAVTQRETQTLNLKLNFSPQPSACFSSMLCSTFPSKAEASYESSLIILSHPN
TTPVLTLPVDFSSFDTSELSRPPNRLHSYSGSILRTEIQSASIISSSTKELQSDRDLGTR
ILSTTTKPTLKSHKISDIKSDTIEVPLVTLFNAPSHLSSSIPEVVQTLLPSYQKPSTLLF
PTSERLQQSMESTWILPSFSFSHKPQNITAGRANSSPKVAHSIKFLTATIGCLFFFPIPA
NTFYDEEDGNSTQLSLKIIPTDGSPLGSESWLQFNTSQQTMHGYPLDIDFQYSPQEFVLS
ATDSGGLTAWESFTVELLKPTNVPCHLYTVRTKNSYYSFLRERKRIHLFLEKLSLYLNSS
SPKDITVITLKPGSTVISWYNRLLCTSANTSSSWCAQDEIQEALEKLRVPDGYVSPRFVK
AMLPEYKIDVIFNVSYSEICFPTTKPFDGSFNSAVPTPQDKNNTTIRKTPFALLSSLCAT
VGVLIILVYWFCKYHRKIPGPQSMTFQRNPQLSHANMELDVLKPRKAPVHECRASPSPQS
WIPHSVPLTSQQQYSRSIRLPHILPSFQPPKYQLPPCYQEGMTAQNEQGNTHRLKRSFK
Download sequence
Identical sequences XP_012984256.1.78019

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]