SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_013877581.1.33752 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_013877581.1.33752
Domain Number 1 Region: 413-560
Classification Level Classification E-value
Superfamily TRAF domain-like 1.03e-49
Family MATH domain 0.000000107
Further Details:      
 
Domain Number 2 Region: 139-210
Classification Level Classification E-value
Superfamily TRAF domain-like 4.32e-19
Family SIAH, seven in absentia homolog 0.0078
Further Details:      
 
Domain Number 3 Region: 363-412
Classification Level Classification E-value
Superfamily Trimerization domain of TRAF 6.28e-19
Family Trimerization domain of TRAF 0.00065
Further Details:      
 
Domain Number 4 Region: 75-144
Classification Level Classification E-value
Superfamily RING/U-box 0.0000000000435
Family RING finger domain, C3HC4 0.015
Further Details:      
 
Domain Number 5 Region: 202-259
Classification Level Classification E-value
Superfamily TRAF domain-like 0.00000144
Family SIAH, seven in absentia homolog 0.011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_013877581.1.33752
Sequence length 596
Comment PREDICTED: TNF receptor-associated factor 3 isoform X2 [Austrofundulus limnaeus]; AA=GCF_001266775.1; RF=representative genome; TAX=52670; STAX=52670; NAME=Austrofundulus limnaeus; strain=Quisiro; AL=Scaffold; RT=Major
Sequence
MSSGRISDGREVQIPLQQVAPSLVSPLSCSPTFTPPSFRTASHWPLCELPPPQGVPAGFL
PLLGGFRDHFVETPEAKYRCLDCGLVLCHPRQTECGHRFCQSCINKILSGPNPTCPTDKE
PLFKDKIFKDVCCHREIMALKVFCRSEANGCQEQMSLQQIPDHLNVCPFYEVPCPLGKCK
ERMMRKEIPDHLTWKCKHRETSCEFCMAKMPLTELQLSSHQHDCPKAQVSCVFQRYGCTF
KALNQDMRQHDSTFAAEHLRMMVTRNCLLENKVEDVKEELVERYKVLPALSSRLSELENQ
NNELRDKNRQTEQKLVTMQKLMSSHSEKLLELELELRSLRALRDEVESLRGALDGVRTRL
GTLEQGGRCGTGSTHTLATLETQVGRHDNMLSVHEIRLADMDLRFQVLETASYNGTLIWK
IRDYKRRKQEAVAGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGSHLSLFFVVMRGE
YDALLPWPFKQKVTLMLMDQGPSRKHLGDAFKPDPNSSSFRRPAAEMNIASGCPLFVSQN
LLETGSYIKDDTIFIKVGVRPPGPGSEPLRDISILSLNKRIWFLFSLSSALVLAQH
Download sequence
Identical sequences A0A2I4CC65
XP_013877581.1.33752

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]