SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_013979248.1.97760 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_013979248.1.97760
Domain Number 1 Region: 94-407
Classification Level Classification E-value
Superfamily WD40 repeat-like 1.47e-101
Family WD40-repeat 0.0000000000234
Further Details:      
 
Domain Number 2 Region: 2-76
Classification Level Classification E-value
Superfamily Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain 9.68e-26
Family Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain 0.0000114
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_013979248.1.97760
Sequence length 410
Comment PREDICTED: lissencephaly-1 homolog B-like isoform X1 [Salmo salar]; AA=GCF_000233375.1; RF=representative genome; TAX=8030; STAX=8030; NAME=Salmo salar; breed=double haploid; AL=Chromosome; RT=Major
Sequence
MVLSQRQRDELNRAIGDYLRSNGYEEAYSTFKKEAELDMNEELDKKYAGLLEKKWTSVIR
LQKKVMELESKLNEAKEEMTLGGPVAQKRDPKEWIPRPPERYALSGHRSPVTRVIFHPVF
SVMVTASEDATIKVWDYEAGDFERTLKGHTDSVQDISFDQTGKLLASCSADMTIKLWDFQ
GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMV
RPNQDGSLIASCSNDQTVRVWVATSKECKAELREHEHVVECIAWAPDTAHPTILEATGSE
SKKSGKPGPFLISGSRDKTIKMWDISTGMCLMTLVGHDNWVRGVLVHPGGRFIVSCADDK
TLRIWDYKNKRCLKTLFAHEHFVTSLDMHQTAPYVVTGSVDQTVKVWECR
Download sequence
Identical sequences A0A1S3KKH7
XP_013979246.1.97760 XP_013979248.1.97760 XP_013979249.1.97760

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]