SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_016123551.1.42290 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_016123551.1.42290
Domain Number 1 Region: 393-542
Classification Level Classification E-value
Superfamily TRAF domain-like 8.01e-50
Family MATH domain 0.0000000804
Further Details:      
 
Domain Number 2 Region: 342-391
Classification Level Classification E-value
Superfamily Trimerization domain of TRAF 1.96e-20
Family Trimerization domain of TRAF 0.00076
Further Details:      
 
Domain Number 3 Region: 115-185
Classification Level Classification E-value
Superfamily TRAF domain-like 9.15e-19
Family SIAH, seven in absentia homolog 0.0063
Further Details:      
 
Domain Number 4 Region: 50-120
Classification Level Classification E-value
Superfamily RING/U-box 0.000000000234
Family RING finger domain, C3HC4 0.02
Further Details:      
 
Domain Number 5 Region: 177-239
Classification Level Classification E-value
Superfamily TRAF domain-like 0.00000575
Family SIAH, seven in absentia homolog 0.014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_016123551.1.42290
Sequence length 546
Comment PREDICTED: TNF receptor-associated factor 3-like isoform X2 [Sinocyclocheilus grahami]; AA=GCF_001515645.1; RF=representative genome; TAX=75366; STAX=75366; NAME=Sinocyclocheilus grahami; AL=Scaffold; RT=Major
Sequence
MSAGRNVEQQIALQQRPPSLAMPSMAQRSRHEPGFLPVHGGFRDRFVTTPEAKYCCESCR
LVLCNPRQTECGHRFCESCITDLLSKPNPVCPADVEPLFEDKIFRDVCCNREIMALKVYC
RSEKNGCKEQMSLQQVMDHLEVCPYFEVPCPLGKCKEKMIRKDMSEHLSHKCKHREITCE
FCNHKMAFTELQLSIHQHDCPKAQVTCSFIRYGCSFKGLNQEMREHESSFASEHLRMMVV
RNTTLEAKVEDVKSELMERYKVLPSLSSRLAEVETQNEEMREKIRQLEQKVVSVQMLMST
HSEKLLEVEMELRELRPLRAMREEVEALRASVESMRSNVASLDSGRVGSSPGSHTLGSLE
QQLSRHDDTMSVHDIRLAEMDLKLQVLETASFNGTLIWKIRDYKRRKQEAVASKALSLYS
QPFYTGYFGYKMCARIYLNGDGMGKGTHLSLFFVVMRGEYDALLPWPFKQKVTLMLMDQG
PARKHLGDAFKPDPNSSSFRRPNVEMNIASGCPLFVAQTVLENGTYIKDDTIFIKVTVDT
SDLPDP
Download sequence
Identical sequences XP_016123551.1.42290

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]