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Domain assignment for XP_016156734.1.66865 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_016156734.1.66865
Domain Number 1 Region: 206-325
Classification Level Classification E-value
Superfamily Retrovirus capsid protein, N-terminal core domain 1.41e-20
Family Retrovirus capsid protein, N-terminal core domain 0.00046
Further Details:      
 
Domain Number 2 Region: 11-98
Classification Level Classification E-value
Superfamily Retroviral matrix proteins 3.65e-16
Family MMLV matrix protein-like 0.0043
Further Details:      
 
Domain Number 3 Region: 424-466
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00000000181
Family Retrovirus zinc finger-like domains 0.002
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_016156734.1.66865
Sequence length 480
Comment PREDICTED: uncharacterized protein LOC107603883 [Ficedula albicollis]; AA=GCF_000247815.1; RF=representative genome; TAX=59894; STAX=59894; NAME=Ficedula albicollis; AL=Chromosome; RT=Major
Sequence
MGASESKEIPKVSPLGSVLAHWKELVGYGGTETKKELVKFCTRWWPLYRLEEGVKWPSTG
TFDYETLLQLMLFLRREQKWQEVTYADTFFTLQKHPEWQWDCGIRPPSGPFVLTLEKDYK
ANRGKLKRCCSACSIDQRCIHPDKVYQTEASPPTPEPREPNRLYPPLPPSDSEEEEPSPQ
GPIASRTQKQTREVLQAPLMEAVTPKGTIMLIRVPFSTQDLEAWEKIAKRYQSDPTGVAR
RLRFMIKQHNPDWDDMQLLLDALTETEKQMVLKVARDLAEDVCRRTQEHIKDVLPLQDPG
WDRKSEGLGRLRRYQELIVKGLERAIPRPSLYAIKQGPSQTPTEFLDQLREAMRLHTTLD
PQSDEGTPYLVNLFVGQSTGDIRRELQKIRSPASWDLETLLDEAWRVFSSREERYRQGMR
QLVRVREEEKGKRGQGPPRLGKDQCAFCKEFGHWKNQCPERRRDDKQRRGDREGERWLLM
Download sequence
Identical sequences XP_016156731.1.66865 XP_016156734.1.66865

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