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Domain assignment for XP_019713092.1.30352 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_019713092.1.30352
Domain Number 1 Region: 2239-2426
Classification Level Classification E-value
Superfamily BRCA2 helical domain 3.66e-72
Family BRCA2 helical domain 0.000000711
Further Details:      
 
Domain Number 2 Region: 2427-2545
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 6.94e-40
Family Single strand DNA-binding domain, SSB 0.00000949
Further Details:      
 
Domain Number 3 Region: 2576-2711
Classification Level Classification E-value
Superfamily BRCA2 tower domain 7.46e-37
Family BRCA2 tower domain 0.00015
Further Details:      
 
Domain Number 4 Region: 2796-2932
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 1.03e-34
Family Single strand DNA-binding domain, SSB 0.00029
Further Details:      
 
Domain Number 5 Region: 2548-2576,2712-2795
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 4.71e-29
Family Single strand DNA-binding domain, SSB 0.00064
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_019713092.1.30352
Sequence length 3080
Comment PREDICTED: LOW QUALITY PROTEIN: breast cancer type 2 susceptibility protein [Hippocampus comes]; AA=GCF_001891065.1; RF=representative genome; TAX=109280; STAX=109280; NAME=Hippocampus comes; AL=Scaffold; RT=Major
Sequence
MYDCLTEELCKELGQLDPDWFQVLTTRASSKEGNLSDSDDQEELCPNQEANFKTPLRKTA
AADVTQSQHSSIPRVFRRSYVPSPDNDDQQEIEPLPWDTRSPCLFGLAKDAVPHSDYGYA
RPRTPNWFDLLHTPQVSPASYAQHICESLGADIHPDISWTSSLNTPPALPSTLIISKTIE
SPSPKTFCMGKSAVLVRKLFPSLSNDSRQGVASPQSNDSLEVLQDSDFPEAGPHPTLQKS
PRRSPEQSNGTRRQPLPEAIRSPTPSVPDGTENSPPMILTNSSSVLRQVKSERTRRMEEK
EHGSSPSDVSIESELAFSEQRESDQALCRNPPVETEDSELTPWSPLPLSEIPATTVATQV
EDKCPTQAESPVKASLKCAGFTQKKTAFIYTIDKEKHSLKNNSVQGHKLPVTQMSKANDG
AGVCNVGDGKDELQQREAVAKEKLPSLLRVNTKDLEMSQLCRAFAQDLSQMSYPGAPPQV
GPPSPPPPPCGFSPFACLTALRVARQKAKRQVGPLGEVHLDAPAPSDSGFLSADADVSHV
TAACAEKQELRHRRTFESTPTKQHEMCLQEVLPGTWTDTKDTAQPRGSFKDSTHPLVSLQ
SNGCERTQEIVNVSLPSIQVSGFKTTSNQSMQIPAAEPQKDEQPFDMCDAQRQPMKSVPG
KETPTTSDSALSRPGSLSEKCMWKNRDENGREREETLQGFDGSFQQVQIVPKSPANVSTG
TCQADGAISCDRDPKEEIPAGSSSHPSRPPKASQNNLPFDSYDINESIQGFLDMCDAQRQ
PMKSVPGKETPTTSDSALSRPGSLSEKCMWKNRDENGREREETLQGFDGSFQQVQIVPKS
PANVSTGTYQADGAISCDRDPKEEIPAGSSSPPSCPPKASQNNLPFDSYDINESIHGSSS
FVKPVQDATKSPGNANAVAHQVDQAFECARDATEEIPAASASASCAQNCDRSNCQLTASQ
KADVKALCTLLEEAGSQFDFTQFRTVKLKQPGKEASAPSSKADKDLEPHLLSGIDFEDSF
CAEPNEKTTSTSCGTTHLEESGVARQPLCAHTTEKEERAEESLVRVSKKCLKKTKHLFQV
LEASTPAQKQSVENDRSTMRTSRNEQQFVDGYDREEPLQGFFSSAIPDQSAPKGSGNMLA
SARQEGFRMASGKSLLLSPRAMQKAHFVFKDCAAENGPRLVETEPLMNVAASPTLVSSVG
GCSSSSTAFCTDGGKRESVSSEALAKQRSFSGIKHVDHSLGGSQFAGGKQVSSAAPKKTE
SLLDVCHEVEEHPVCDQAFGKSDFPLTSGKPRSFSANDPFDKLGSTSKSLSVSGGKTNDG
ERGNAANVQATDGQLDPVENEKPEHQNSENSASSWLELDFSTWTGGGFSAAGGENASASA
VALTKAKPLLQEDRGAHPSAEFKNGTSSLLEGVDHQPGGFRTAKGKRVAVSSAALKKAQL
LLDDCSEVKEHPLCYPTATKSELPSASEKPGSFSDNSLFADDSLFDNLDCTPESPSVSDV
KDAKTANATIVDNIDCPNDQVENGQCDNNVANCANPSLDIGSSSLLSVGGFSTASGNKVY
VSAAALKKAKDLLQEDAGDALSSKMQHRSFLGVERADLAAASQNVTASSAALPTIKFLLD
EDLAVEEHPGCSPPLGKSEFLSAREKPASFAAKSDLGSTLESPALTPHDSKRGNSTSKET
LGGCFPIAGVTPKKASLPHKATLEADAHFKGMMDSHDGTSGKENPSIVGATAFTVKTDAQ
NGPLPNGNIRLHRDEEKPGNPSLDVACSSLSGARFSAASGSALPVSAAAMAAAKHFFQED
HEDDPSAKMKPGGSSGVDRLDCQAGGFQTAGGKRVTVSSAALPVSAAAMAAAKHFFQEDH
EDDPSAKMKPGGSSGVDRLDCQAGGFQTAGGKRVTVSSAALKRAKFLLDDCDSVEDHPDD
YPLARKSEFLSASEKPGSFSAKSHFGDLGSTSDMMAAGDGMSDVRVSKNIPKIQLGNKSA
APFGDDKNTRHYKNLANSAVSSSAICSSSPSGSRFSTASGRSLSVSDEAVIRAKSLFNDL
EGENQKLHRNASLQHAKRDGPQNVGLQTADGGRASIASAALKKSKSFFAESHESTRQPPS
KRRLLEEFDRSLDSPRGSNLCPQTSSPKGLLKDRPVFKYNVSLGPNITKPSSKNKQPAGL
TLPFFKKTEARPRRSDITTPPAFVPPFKRQRTVVEQDSTKLFSKKTEDPPTTASDQSMTI
PFCGRIPPTDTSWGQGTPLANVELARDMQDMRIRKKTRQTVRPLPGSLFRAKTSGATRIH
LKDAVARRPPAKYTQKQLYEYGVHRHVCNITSETAEAFRFRLELFFKKDALTDESGIQLA
DGGRLIPSKDGTAGKEQFCRALCDTPGVDPKLLADEWVYNHYRWIVWKLASMERSFPQTM
GGRCLTPERVLLQLKYRYDVEVDHSRRPALRKIMEKDDAAAKTLVLCICGVVSQDQVANP
CAVVWLTDGWYSVKAQLDEPLSALLRKGRLAAGGKLIIHGTQLVGSQEACAPLEAPQSLM
LKIFANSSRPARWDTKLGFYKDPRPFLLSLSSLFSNGGPVGCVDIVVLRSYPVQWMERKS
DGGVVFRLARAEEEEEARHNGLKQKAMEVLYAKIQAEFEQEDIESKRQLRRRTVSHRDIG
SLQDGQELYEAVGDDLAGLEALLSEQQLETLRAYSRSLMDKKRAEMQDRYRRATEENTDG
GQASCPQRDVTPVWKLCVADSLNPTGHVYQLNLWRPSSDVQALLKEGCRYKVYNLATSDR
KKRGAVGALQLTATKKTQFQDLQASAEWLSACFQPRVSTDFVALQNLEFDPPCGEVDLTG
CVVSVLDGKGPSPAFYLVDGNVNFVKVLCFSSLLQAGLADVVKPGALLALSNLQLRGRST
RPTPVVYAGDLTVFSTKPKEEHLQKALGRLRDLLQEQEKFFVCAEDKLSQVLKRDVCSPA
LPPKTPPTQHVWTNTTSQQPVRSLGSFTPPSRNLQPAADTSLSEKDPRSLKRRRAVDYLS
RVPSPPPLFLPPGLAASPFVKKTFNPPRRASTPRTLKTVHTPNLVPVSASPPDEKEEEAW
VNDHELAMIDTQALRSNEAR
Download sequence
Identical sequences XP_019713092.1.30352

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