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Domain assignment for XP_020440277.1.2935 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_020440277.1.2935
Domain Number 1 Region: 2447-2636
Classification Level Classification E-value
Superfamily BRCA2 helical domain 1.57e-78
Family BRCA2 helical domain 0.00000016
Further Details:      
 
Domain Number 2 Region: 2798-2935
Classification Level Classification E-value
Superfamily BRCA2 tower domain 1.83e-56
Family BRCA2 tower domain 0.00000883
Further Details:      
 
Domain Number 3 Region: 3021-3156
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 5.31e-43
Family Single strand DNA-binding domain, SSB 0.0000398
Further Details:      
 
Domain Number 4 Region: 2637-2767
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 7.45e-42
Family Single strand DNA-binding domain, SSB 0.00000369
Further Details:      
 
Domain Number 5 Region: 2769-2798,2937-3020
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 3.77e-33
Family Single strand DNA-binding domain, SSB 0.00013
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_020440277.1.2935
Sequence length 3368
Comment breast cancer type 2 susceptibility protein isoform X1 [Corvus cornix cornix]; AA=GCF_000738735.2; RF=representative genome; TAX=932674; STAX=181096; NAME=Corvus cornix cornix; AL=Scaffold; RT=Major
Sequence
MDKKMACKPVERPTFFEIFKAHCSESDLGPISLNWFEELSAEAPPYEPKLFREVDGPSGW
LDQTAFKTPKTKPSTYSQLASTLLLFKEQNAILPPCSSPEKEPDQKKIGANRENLISPNN
TRRKIDQENEILSSPGTCHNCLTASPAILRNTYRTPQRNNIPGPHGSLFCTPKLSEVRTP
KCISESLGAEVDPDMSWSSSLATPPTLGETVIIARENDSISGAKQQDGRVDTILHNYFSK
HDECPGISDASMLSVPEPVKLNAEDDMKDLESEVLDGLLGEMDSFEDTFSMPAKSSGTLL
LMPHALDAVEKYEINPDKTQEKGDVPSEQPNRRKTGISHEIKTNSWTENSHSTGMNGSLL
QNTSEDMGDGKGGCLIGHEKELESLRSTGDVRDYRTHKSFEIERPVKERVQSPSSQWSQL
NLSDLDVTHLEMSVCSSPPCDLQEKSVLTAKDDAVETSLLNTSGLIKAQKLSSVNLAEKC
YEMKNTENNPTSEITPVKSVSLSVQDPQLVKGCAAEVSKMSFLNCNSFLIEHTNVTEYSV
VYSGNFSKHLKATSKSVITDVLSHPLVCNATSPDNYDLHLINSENTLTKSGFKNLKMLPS
LRKRSKRFIYRINNTLLYQEEKIQKEVTSESPLHTVLPHSESDSYKFKGCQVASDVEQDH
FLPSDRKHLESNTRTKNFSTSTLKMDIMDNSADNSFSDRLKQQDLRDLGENARQDQPATS
IECLEVSNTLKEDTTNSLNSEIISNIKRKVLTSACLMARKRSRFLPKSCSLGKSEDKDMS
ANVNDGAAVPQSLKELGSSHRDKELLVDMHSDSISMTNSISHNTSCHINFGVTGVSSDCC
NKLSPGKRHATDQRSGADCREVHRLLGINCSENDNTGLKQAEETDAAAFSEDVANNEDPK
PAENNKSAHADAFSNVAVDISKELLDGVDNSSLNEVISAEDKQVAPMYSSKKPDKNLKCK
AESSVNLNACSLNLGFSGFQTASNKQIKFSEASIAKGRMLFKDIENECFEASSMETVRNF
SNQVKKENTLFSDSKSKLGSNLSDSLGDSQASFLEPRHTQFIPHKVGLCKSFPRTPQALQ
EANQTLTASQEAEIAELSSILEETGSQFEFTQFRKKSNTVQSHGLQELGTEETHGTKNVE
NFSETRKDVEFCSTFKSENQVKKGKYCQEEDTNEGSEVVKKEKENAVVFHENDKKVTFTN
LDINESRRSDESFPIANKQDSFSNFIGFTSAGGKKITISKAALSRSAELFRDLDDDNYLF
KSETGTRWHNSNASMSSDSNFFRCLTKGSKEKAVRVPDFKSTNAVSHTGSVSYHAQNKNE
ENTSTAFKENTEIKTKISVNNTENVSLSSISVINGLLSTKNHKQNYKTSKQFLNRGDEEG
NLLDSSLDVACLEDAVMTAEHSLNMSYEMEIQSPNHKGEDRKEDECLSPKLQTPADGDIS
IPDAALDHSLPLFSVQCGERDVNVLENSNEEKKNCKNVEEDTTHDKNLLVNESRIIIGSY
RHYQTPLEQEVNVGESEVQGSYLTSFHTASGKKIAIADGFLAKAEKFFADVNVGKEHNDN
FENLIKKRKCGKSCVKDCDLCIDSEKLNFNEKFVPEGPEAQFNQVIESSPIKHAAILDPA
KVDTFVDPGETCEKSLVTSRVHKKADVRPGKSELESLRGQKSDTLSRTCLSEDGKLLAEK
KVDYSPRKRDDSENTDDFPVHSSASLHLMKVPSDFEDNCVPGDTKNTLFVEESNSKADQS
LLLDSKSSCSYMNGDSKEFNLEHLNEPAADKNCFTDTMVSACQNRSLVSLPEKEIKFNRL
KETTLNVEKQRGDLKQTMFSTAKGKAVSVSESSLARVRQMFQEDCSEAVKYEIEPKSRTN
QTEISRNSSIVLHTECPNSAKFFNATTSKEVNSATSQFIKVSASSNENCHQERSTSADAK
SVSNSQKQPFEQSIKLLGHLSVPDKQIEPAGASTSSFGLFSTASGKPVQLSEESLKKARQ
LFFEMEGNHSSHVEEAFLVEEDVEKSKMHTEVLPRKMQVVSSKGEESTSREIISDPAFGF
STASGKQVKVSKDAYQKAKAILEESDYFLSSGLCTTDQLSSIKEGGQHVKSLTDKVISEF
KTEKSCNQDSDFKSICPQEMKSFPSTSHIKMHEHTPYNQKNKQLTSFKTNFQQEETESFG
KWELNLGSKAESEAILCSDTAKAEINTNLQNPKTYLEVEAVESARAFMEDSSSISGVQIN
AAQTFSGRLDKNFQNKTFGKRHFEGNNSLGEPPIKRQLLLEFNRTKNSPRSLKASKSTPD
GIFKDRRKFMYHVPLKPITCQPFGSTKERQEVKNPTLTLPDQDFKGFQSKPAIFQHCALR
HSSDGTAGVSTPCKALAKESEETRSLYKSGKAAKTFIPPFKTKLTFSTCEQGSSKRCDSP
ISKNMTKEMELNQITTEQNNADPQDHQSCMQHAADTDLENGNLAMARMVTNLRCARDLQE
MRIKKKCRQNIRSQPGTLYVIKTSASNRISLKTAVEETSPSFYSTEELYKYGVSKQCIQV
NSTNAESFQFLIEDFFSKEYLLAGNGMQLADGGWLIPTDEGKAGKKEFYRALCDTPGVDP
NLITEAWVYNHYRWIVWKLAAMEVSFPSEFANRCLTPEMVLLQLKYRYDLEVDKSKRSAI
KKIMERDDAAGKTLVLCISKIISLNTVVSPSSSSKNMESKKAAALIEVTDGWYGIRALLD
PPLKALLDRRRLTVGQKIIVHGAELVGPQNGCTPLEAPDSLMLKISANSTRRARWHAKLG
FHRDPRPFPLPLSSLYSEGGAVGCIDVVIQRTYPIQWMEKTSAGSYVFRNSRAEEREAAK
HAEDQQKKLETLFAKIQAEYEKHEERTSRRTPRSRTVTRQQIRNLQDGAELYEAIQNASD
PGYMEGYLSDDQLKALQAYRQLMKDKKQTQMQEQFKKALESAEQEENGCYKRDVSAVWKL
YVVDYRKQEKYKGAVLSIWRPLPDVCSLLKEGGRYRIFQLAASQSRGRADSTNIQLTATK
KTQYLQLSVSQEMLVQIFFPRKALEFTSLLDPSFQPPCAEVDLVGVVVSVSRTGFPTVVY
LSDENCNLVAVKIWTDLRHLAIEDIVVRCSLISASNLQWQSEFRSEIPVLLAGDLSVFSA
SPKECYLQEKINELRSMIENVASFCSDAEGKLMNLLRRNLLLTPSLTKRCVLESPSPSCS
YAEDKSLISSRIEMKHPSPLSTSTPNMKLVTPGSAKTPSSATVNEDHLKTSKKRKAMDFL
SCIPAPPPLTPICSVISPSVKRAFQPPRSLGLQHSKSSKETDQNIGHVTPCRKLRETVHL
PENDLVADEELAMINTQALMNNLPEEKKMDYVNENSNATATTLSDDLSSRNRSRSTGEAN
NSSKAVLK
Download sequence
Identical sequences XP_020440277.1.2935

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