SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NP_001011149.1.99540 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NP_001011149.1.99540
Domain Number 1 Region: 34-141
Classification Level Classification E-value
Superfamily Thyroglobulin type-1 domain 1.87e-16
Family Thyroglobulin type-1 domain 0.0023
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) NP_001011149.1.99540
Sequence length 312
Comment epithelial cell adhesion molecule precursor [Xenopus tropicalis]; AA=GCF_000004195.3; RF=representative genome; TAX=8364; STAX=8364; NAME=Xenopus tropicalis; strain=Nigerian; AL=Chromosome; RT=Major
Sequence
MHLSTVLRLGAALLCFALVAQAQSPGCTCSTLYMGKCDNSGAGGCQCTLAIGTATQSINC
SALIPKCWLMKRESLGTKAGRRVKPVQALVDNDGLYDPECDVNGVFKARQCNNTDTCWCV
NSAGVRRTDKGDKNWKCPELVKTNWVIVEMKRNGTESVSDADLIQALKTTITNRYGLPDK
YISVELETPLIYIDLKQNTSQKLPGEVDITDVAYYMEKDVKGDSLFPANNQFQILANGNK
ISVKEPMIYYIDEKPHEISMRHLTPGVIAVIVVVVLAVVALIAVLIFTRRKKARYQKAEM
KELNEMQKEVST
Download sequence
Identical sequences Q5U4Z2
NP_001011149.1.99540 gi|54311342|gb|AAH84898| gi|58332000|ref|NP_001011149|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]