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  Home > Genomes > NCBI 2017_08 genome > NP_001024052.1.50509

Domain assignment for NP_001024052.1.50509 from NCBI 2017_08 genome

Domain architecture

Domain assignment details

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Strong hits

Sequence:  NP_001024052.1.50509
Domain Number 1 Region: 24-262
Classification Level Classification E-value
Superfamily Calponin-homology domain, CH-domain 6.82e-87
Family Calponin-homology domain, CH-domain 0.00000376
Further Details:      
 
Domain Number 2 Region: 281-402
Classification Level Classification E-value
Superfamily Spectrin repeat 1.1e-32
Family Spectrin repeat 0.0000666
Further Details:      
 
Domain Number 3 Region: 2117-2228
Classification Level Classification E-value
Superfamily PH domain-like 2.14e-29
Family Pleckstrin-homology domain (PH domain) 0.00023
Further Details:      
 
Domain Number 4 Region: 1530-1675
Classification Level Classification E-value
Superfamily Spectrin repeat 3.36e-27
Family Spectrin repeat 0.0012
Further Details:      
 
Domain Number 5 Region: 1213-1366
Classification Level Classification E-value
Superfamily Spectrin repeat 4.39e-27
Family Spectrin repeat 0.00045
Further Details:      
 
Domain Number 6 Region: 1001-1156
Classification Level Classification E-value
Superfamily Spectrin repeat 5.28e-27
Family Spectrin repeat 0.0000227
Further Details:      
 
Domain Number 7 Region: 1871-2004
Classification Level Classification E-value
Superfamily Spectrin repeat 1.96e-26
Family Spectrin repeat 0.0023
Further Details:      
 
Domain Number 8 Region: 1436-1578
Classification Level Classification E-value
Superfamily Spectrin repeat 1.96e-24
Family Spectrin repeat 0.00064
Further Details:      
 
Domain Number 9 Region: 594-730
Classification Level Classification E-value
Superfamily Spectrin repeat 4.06e-24
Family Spectrin repeat 0.0005
Further Details:      
 
Domain Number 10 Region: 807-942
Classification Level Classification E-value
Superfamily Spectrin repeat 4.08e-24
Family Spectrin repeat 0.0018
Further Details:      
 
Domain Number 11 Region: 1743-1897
Classification Level Classification E-value
Superfamily Spectrin repeat 4.39e-23
Family Spectrin repeat 0.0023
Further Details:      
 
Domain Number 12 Region: 412-511
Classification Level Classification E-value
Superfamily Spectrin repeat 1.07e-22
Family Spectrin repeat 0.00029
Further Details:      
 
Domain Number 13 Region: 735-838
Classification Level Classification E-value
Superfamily Spectrin repeat 2.49e-17
Family Spectrin repeat 0.0012
Further Details:      
 
Domain Number 14 Region: 516-626
Classification Level Classification E-value
Superfamily Spectrin repeat 5.76e-16
Family Spectrin repeat 0.0014
Further Details:      
 
Domain Number 15 Region: 2008-2076
Classification Level Classification E-value
Superfamily Spectrin repeat 0.0000000000183
Family Spectrin repeat 0.002
Further Details:      
 
Weak hits

Sequence:  NP_001024052.1.50509
Domain Number - Region: 1164-1215
Classification Level Classification E-value
Superfamily Spectrin repeat 0.0676
Family Spectrin repeat 0.0022
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) NP_001024052.1.50509
Sequence length 2257
Comment Spectrin beta chain [Caenorhabditis elegans]; AA=GCF_000002985.6; RF=reference genome; TAX=6239; STAX=6239; NAME=Caenorhabditis elegans; strain=Bristol N2; AL=Complete Genome; RT=Major
Sequence 
MATVDGNSGAYTQDEDYDDNSSARLFERSRIKALADERELVQKKTFTKWVNSHLVRVSCK
VQDLYMDMRDGKMLLRLLAVLSGERLPKPTPGKMRIHCLENVEKGLQFLRNQHVHLENLG
SHDIVDGNSRLTLGLIWTIILRFQIQDITFEDADNHETRSAKEALLLWCQMKTAGYPNVN
VKNFSTSWRDGLAFNALIHKHRPDLVDYDNLQKSNALYNLQSAFDTAENQLGLAKFLDAE
DVNVDQPDEKSIITYVVTYYHYFNKLKQDNIQGKRIGKVINELMENDKMINRYETLSSDL
LEWINAKIQLLNERHFENNLEGVQRQLTEFNDYRTQEKPPKFDEKGELEVLLFTLQSAMR
ANNQRPFVPREGKLIADINRAWQSLEKAEHERELVLKEELIRQEKLEQLAARFNRKAEMR
ETWLTENQRLVSQDNFGNDLSSVEAATKKHEAIETDIFAYEERVQAVVAVAGELEAENYH
DQAKINERKENVLQLWNYLFQLLLARRVRLELSMAIQKIFHDMLLTLDLMDDIKSRLLSE
DLGAHLMDVEDLLQKHALLESDINIIGERVNNSIAQAQRFRNPDGPDGSGYKPVEPGTID
ERSDVLQKRYKELLDLAAERKRRLEDNKRLCQFWWDVAELEHGIKEQEQVLSSTDTGRDI
VTVSHLLAKHKNAENNLRDLEKYLDRLDVSGKELQDESIPGSDNIPPRLAEIRDYINKLK
ELSASRKERLAGGVEYYQFFTDADDVDRYLYDTLRVMSSEDVGKDEGTVQLLLKKHDDVH
DELQNFDQHIKVLHAKAESLPQEAREHPDIRQRLDTTLKQKAELENLSQLRKQRLIDALS
LYKLYSDADSVESWIDEKGKLLATLVPGRDIEEVEIMKHRFDTLEQDMKNQEAKVTNVND
LARQLLNVEHPNSDDILHRQNKLNARWAQLRDMVDQKRNELERAHRLETFRIDCQETVTW
IEDKTRVLEDSDALTNDLSGVMKLQRRLSMMERDLGAIQAKLDSLHKEADDIERERPQEA
QAIREDIKRIHQVWDILNKKVREHEAKLDEAGDLQRFLRDLDHFQAWLTATQRQVASEEE
PQSLAEAEQLLNQHAAIREEIDGYAEDYKKMRAMGDRVTQDQTDPQYMFLRQRLAGLQEG
WEELQRMWDNRQHLLSQGLNLQMFLRDAKQAEVMLSQQENYLAKDDIPQSLEQAENQLKR
HQDFITTMDANDEKIRAVGMFGDQLCQDGHYAADKIHKKARNIDERRGANREKAQEVLKK
LKDALSLQQFLSDCDELREWIEEKMIRAQDETYRDAKTITSKFVRHQAFQSELAANKERL
DQLKHAAINLGDDKPEYHGTIDPQIEELATQWDELEKTTEEKGQKLFDANRQQLYVQSIA
DMKEWATQLENEMTREDQPGDLTTVNVAMQKQHLIETEMIKKAQHIDQLMEMEPQLEELH
PDELENIKAHRLAVQEQLQRLQAPLDDRRKALERKKAAFQFGRDVDDEKLWISERLVLAK
AQNLGESLPDCHRLQKNLQLLSNEIDNHEPWINQICNNGQELIDEGHANGPAFEKKIQEL
RSAWQELKEAVKDRKGDLGESEKAHQFLYDCGEAEAWMSEQELYMMQDERGKDEFSTKNQ
IKKHERLQSDIDKFADTIRALATKAHKFVEEKSPLTEQIQVRQAQIEKLYAGLQDLSKER
RKRLEETLELYALHREIDDLLQWIADKEVVAGSQENGQDYEHVQMLQERFQQFARDTENI
GSERVANANDGCDTLIGHGHTDAPTIALWKDSLNEAWENLLELMDTRAQILEASRLLHKF
YHDCRDCLSRIMEKTHAMPDDLGRDSSSVGALSRKHQNYLKDIAAIGEQVAQIERDAAEL
RDGYAGDKALDIGSRESEVVKAWRHLRGLCDARTSRLMDTSDLFKFMNMVRDLLLWMDEV
KREMNSQERPKDVSGVELLMNNHQSLKAEIDAREENFNACISLGRDLLNRKHYASSEIEK
KLIKLTTERAEMMRRWEDRWEYLQLILEVYQFARDAAVAESWLFAQEPYLISKEYGRNLE
ETIKLIKKHEAFEKSAFAQEERFLALEKLTTFELKETQHREEETAKRRGPAHIGSPSRST
PAAETSFGAQDDGAKQGEAFEGTLIRKHTYESLDRKAANRSWEKLYAVLRQNELSFYKDP
KHRDESVHGEPPMALPGCSVNVASDYQKKKNVLSLRLPIGAEYLFQCGSEEDMQRWLTEL
QVATGQAQLEEASRSQTLPAEGSATKKKGGFFSRGKK
Download sequence
Identical sequences G5EG85
K11C4.3a K11C4.3a NP_001024052.1.50509

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.