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Domain assignment for NP_001103076.1.4139 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  NP_001103076.1.4139
Domain Number 1 Region: 280-409
Classification Level Classification E-value
Superfamily ApaG-like 1.12e-40
Family ApaG-like 0.00021
Further Details:      
 
Domain Number 2 Region: 99-265
Classification Level Classification E-value
Superfamily SMI1/KNR4-like 1.31e-21
Family SMI1/KNR4-like 0.0079
Further Details:      
 
Domain Number 3 Region: 6-82
Classification Level Classification E-value
Superfamily F-box domain 2.75e-17
Family F-box domain 0.0044
Further Details:      
 
Weak hits

Sequence:  NP_001103076.1.4139
Domain Number - Region: 418-456
Classification Level Classification E-value
Superfamily ARM repeat 0.00978
Family GUN4-associated domain 0.076
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) NP_001103076.1.4139
Sequence length 480
Comment F-box only protein 3 [Rattus norvegicus]; AA=GCF_000002265.2; RF=na; TAX=10116; STAX=10116; NAME=Rattus norvegicus; strain=BN; Sprague-Dawley; AL=Chromosome; RT=Major
Sequence
MAAVEAETGLLTLESLPTDPLLLILSFVDYRDLINCCYVSRRLSQLSTHDPLWRRHCKKY
WLITEEEKARKNQCWKSLFIATYSDVGRYINHYAAIKKAWDDLKKYLEPRCPRMVLSLKE
GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA
AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI
IGATFTDWFTSYVNNVVSGGFPIIRDQIFRYIHDPECVATTGDITVSVSTSFLPELSSVH
PPHYFFTYRIRIEMSRDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRI
YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKVFNVAIPRFHMACPTFRVSIARLEMGPDEY
EEMEEEAEEEEEEENDDSADMDESDESDEDENESDEGEGEERRRRVFDVPIRRRRCSRLF
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Identical sequences D4ABP9
ENSRNOP00000014478 10116.ENSRNOP00000014478 NP_001103076.1.100692 NP_001103076.1.4139 ENSRNOP00000014478

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