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Domain assignment for NP_001234871.2.44838 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  NP_001234871.2.44838
Domain Number 1 Region: 117-257
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 1.44e-43
Family B3 DNA binding domain 0.0034
Further Details:      
 
Domain Number 2 Region: 542-617
Classification Level Classification E-value
Superfamily CAD & PB1 domains 0.00000000000294
Family PB1 domain 0.032
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) NP_001234871.2.44838
Sequence length 654
Comment auxin response factor 1 [Solanum lycopersicum]; AA=GCF_000188115.3; RF=representative genome; TAX=4081; STAX=4081; NAME=Solanum lycopersicum; cultivar=Heinz 1706; AL=Chromosome; RT=Major
Sequence
MAHVAANHFGGGTHPGASANNALYKELWHACAGPLVTVPREGERVYYFPQGHMEQLEAST
HQGVDQHLPSFNLPAKILCKVMNVQLRAESETDEVYAQITLLPEPDQGEITSPDPPLPEP
EKCTVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPWQELVASDLHGNEWHF
RHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFLRGDSGELRVGVRRLMRQLNNMPSSV
ISSHSMHLGVLATASHAIMTGTLFSVFYKPRTSQSEFIVSVNKYLEARNHKLSVGMRFKM
RFEGEEVPERRFSGTIVGVGDNPSSRWPDSEWRSLKVHWDEPSSILRPDRVSPWDMEPLV
AATPTNTQPPQRNKRARPSVLPSPVQELPALGMWKSPVDSPSSFSYCDPSRGRDLYPSPK
LSSAAKGLGYGENGSMPLSTKTMYWSSQSETCTESVAPASEKRPANGCRLFGIELLDCPT
IDESSSVAMPSAVVEDQPVPSLNVDSDRNSEPSNPIPSVSCEPEKSSLRSTHESQSKQIR
SCTKVHMQGKAVGRAVDLTRLDSYEDLLKKLEVMFEIEGELRGSTKKWQVVYTDDEDDMM
MVGDDPWHEFCSMVRKIYVYTAEEAKKLSPKIKLPVVDVKPVSDGATVGNNEKA
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Identical sequences K4B1N1
Solyc01g103050.2.1 NP_001234871.2.44838 Sopim01g103050.0.1 Solyc01g103050.2.1

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