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Domain assignment for NP_001309856.1.92137 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  NP_001309856.1.92137
Domain Number 1 Region: 203-310
Classification Level Classification E-value
Superfamily dsRNA-binding domain-like 2.67e-22
Family Double-stranded RNA-binding domain (dsRBD) 0.00014
Further Details:      
 
Domain Number 2 Region: 100-184
Classification Level Classification E-value
Superfamily dsRNA-binding domain-like 0.0000000000000022
Family Double-stranded RNA-binding domain (dsRBD) 0.00052
Further Details:      
 
Domain Number 3 Region: 23-96
Classification Level Classification E-value
Superfamily dsRNA-binding domain-like 0.0000000000173
Family Double-stranded RNA-binding domain (dsRBD) 0.0061
Further Details:      
 
Weak hits

Sequence:  NP_001309856.1.92137
Domain Number - Region: 411-480
Classification Level Classification E-value
Superfamily dsRNA-binding domain-like 0.00165
Family Double-stranded RNA-binding domain (dsRBD) 0.026
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) NP_001309856.1.92137
Sequence length 502
Comment double-stranded RNA-binding protein Staufen homolog 1 isoform c [Homo sapiens]; AA=GCF_000001405.37; RF=reference genome; TAX=9606; STAX=9606; NAME=Homo sapiens; AL=Chromosome; RT=Patch
Sequence
MKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGK
GKTRQAAKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVN
FESFPLKQVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPL
PAVERVKPRIKKKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPR
RREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEEKTPIK
KPGDGRKVTFFEPGSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHH
TKDFTRAAPNPAKATVTAMIARELLYGGTSPTAETILKNNISSGHVPHGPLTRPSEQLDY
LSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSE
LDQQSTEMPRTGNGPMSVCGRC
Download sequence
Identical sequences NP_001032405.1.87134 NP_001032405.1.92137 NP_001306063.1.87134 NP_001306063.1.92137 NP_001309856.1.87134 NP_001309856.1.92137 XP_005260584.1.92137 ENSP00000360867 ENSP00000360893 gi|82659091|ref|NP_001032405.1| ENSP00000360867 ENSP00000360893

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