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Domain assignment for NP_062050.3.100692 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  NP_062050.3.100692
Domain Number 1 Region: 39-156
Classification Level Classification E-value
Superfamily C-type lectin-like 1.29e-30
Family C-type lectin domain 0.00000527
Further Details:      
 
Domain Number 2 Region: 252-317
Classification Level Classification E-value
Superfamily Complement control module/SCR domain 0.000000000000459
Family Complement control module/SCR domain 0.0028
Further Details:      
 
Domain Number 3 Region: 197-261
Classification Level Classification E-value
Superfamily Complement control module/SCR domain 0.0000000000032
Family Complement control module/SCR domain 0.0019
Further Details:      
 
Domain Number 4 Region: 157-194
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000144
Family EGF-type module 0.0039
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) NP_062050.3.100692
Sequence length 372
Comment L-selectin precursor [Rattus norvegicus]; AA=GCF_000001895.5; RF=representative genome; TAX=10116; STAX=10116; NAME=Rattus norvegicus; strain=mixed; AL=Chromosome; RT=Major
Sequence
MVFPWRCQSAQRGSWSFLKLWIWTLLCCDLLPHHGTHCWTYHYSERSMNWENARKFCKHN
YTDLVAIQNKREIEYLEKTLPKNPTYYWIGIRKIGKTWTWVGTNKTLTKEAENWGTGEPN
NKKSKEDCVEIYIKRERDSGKWNDDACHKRKAALCYTASCQPESCNRHGECVETINNNTC
ICDPGYYGPQCQYVIQCEPLKAPELGTMNCIHPLGDFSFQSQCAFNCSEGSELLGNAKTE
CGASGNWTYLEPICQVIQCMPLAAPDLGTMECSHPLANFSFTSACTFTCSEETDLIGERK
TVCRSSGSWSSPSPICQKTKRSFSKIKEGDYNPLFIPVAVMVTAFSGLAFIIWLARRLKK
GKKSQERMDDPY
Download sequence
Identical sequences Q63762
ENSRNOP00000003733 NP_062050.3.100692 NP_062050.3.4139 ENSRNOP00000003733 10116.ENSRNOP00000003733

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