SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NP_508797.3.50509 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NP_508797.3.50509
Domain Number 1 Region: 304-520
Classification Level Classification E-value
Superfamily Nuclear receptor ligand-binding domain 2.13e-31
Family Nuclear receptor ligand-binding domain 0.0054
Further Details:      
 
Domain Number 2 Region: 2-80
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 3.87e-24
Family Nuclear receptor 0.00089
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) NP_508797.3.50509
Sequence length 525
Comment Nuclear Hormone Receptor family [Caenorhabditis elegans]; AA=GCF_000002985.6; RF=reference genome; TAX=6239; STAX=6239; NAME=Caenorhabditis elegans; strain=Bristol N2; AL=Complete Genome; RT=Major
Sequence
MSCLVCETDAHGQHFGIRCCRACAAFFRRTLTMNLRYKCRFDRKCEVSFNKRYSCRCCRY
EKCVRVGMRKDNLTSPVSVVQNKSETEKDSSGNETDSIGHSPHSSLESYTCRPPSFEQQQ
QNQNPDPPLLMGNNGTFVQEVASDAYQPNSDMHQLNFSFHRTVIEEVGRAVMPTPPFQQP
PIHIPQPFDYQYTDLLSTDEQNSSAIPSSFTQYNQVPQEYNNESGNQNQMFAMAAQQATQ
DLHVNVQNVLTPTIDAMFGQPPDAFCQLPDIPLTLCQQALLAYREHNKQWPDQDKMIENV
PLDMENFMRNHYIEIEHIARFCMSIRVFAQLPKDQKWIIFKHFWTRFYELDRCFATCQRL
GYNLTDERGLTLNGQIINFGISVVKLENISDMDATQVRNFLKGSMDKFRLIFINPFKKLQ
PTEYELMYMMMSIMWSVSNLPGITDATRDISEKVELRLAEDLHTYYAEQYDNNNPNYAGR
ITRLSSIASAVDEITERKREDSQVSKTFNIFKNDFFFSDLTDFPV
Download sequence
Identical sequences Q19496
F16H11.5 NP_508797.3.50509 F16H11.5 F16H11.5 6239.F16H11.5

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]