SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for WP_002032380.1.97405 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  WP_002032380.1.97405
Domain Number 1 Region: 2362-2605
Classification Level Classification E-value
Superfamily PMT central region-like 1.57e-51
Family PMT central region-like 0.0067
Further Details:      
 
Domain Number 2 Region: 2909-3028
Classification Level Classification E-value
Superfamily PMT central region-like 4.05e-28
Family PMT central region-like 0.0017
Further Details:      
 
Domain Number 3 Region: 3088-3234
Classification Level Classification E-value
Superfamily ADP-ribosylation 6.4e-19
Family ADP-ribosylating toxins 0.013
Further Details:      
 
Domain Number 4 Region: 4132-4342
Classification Level Classification E-value
Superfamily beta-Roll 0.000000000000051
Family Serralysin-like metalloprotease, C-terminal domain 0.003
Further Details:      
 
Domain Number 5 Region: 4050-4142
Classification Level Classification E-value
Superfamily beta-Roll 0.00000222
Family Serralysin-like metalloprotease, C-terminal domain 0.0027
Further Details:      
 
Weak hits

Sequence:  WP_002032380.1.97405
Domain Number - Region: 1461-1598
Classification Level Classification E-value
Superfamily Galactose-binding domain-like 0.00153
Family CBM11 0.052
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) WP_002032380.1.97405
Sequence length 4413
Comment RTX toxin RtxA [Vibrio cholerae]; AA=GCF_000348085.2; RF=na; TAX=1095659; STAX=666; NAME=Vibrio cholerae O1 str. 87395; strain=87395; AL=Scaffold; RT=Minor
Sequence
MGKPFWRSVEYFFTGNYSADDGNNNIVAIGFGGQIHAYGGDDHVTVGSIGATVYTGSGND
TVVGGSAYLKVNDTTGHLTVKGAAGYADIHKNGNGNVSFAGAAGGVSIDHLGNHGDVSYG
GAAAYNGISRKGVSGNVTFKGAGGYNSLWHETNQGNLSFIGAGAGNKLDRTAFNRYQGSR
GDVTFDGAGAANSISSRVETGNITFRGAGADNHLVRKGKVGDITLQGAGASNRIERTHQA
GDVYTQTRGNIRFEGVGGYNSLYSDVAHGDIHFSGGGAYNTIIRKGSGSDFDAQGMEYAK
ADEIVLTTAQMHGFSIANGNKLHTVSAIKSQREPNTYLFAIADDTYTKINKIRLYNDAKT
GKLNYYSEAWFKSGNHLENLANADVSSSDGFEPNPLKGGYTLSNIGIEHQQSVTVHAVEK
SLTEYEWVTYANGAVIDAKEVSLSDAKMGGHAIYADGTKVDVKAVKSNRQPNTYIYAKVL
GPYTKIVVVELANDPKTGALKYQARSWYKEGDHSANIANQDISSATGYNPMGKGGYSLSD
LHYSVNAVRSTSETVADIEEYTDQTLFKPANDSGESSGDVRFNGAGGGNVIKSNVTRGNV
HFNGGGIANVILHSSQFGNTEFNGGGAANVIVKSGEEGDLTFRGAGLANVLVHQSQQGKM
DVYAGGAVNVLVRLGDGQYLAHLLAYGNISVQKGSGDSRVVMLGGYNTHTQIGSGNGLWL
AAGGFNVMTQVGKGDVAAVLAGGANVLTKMGEGELTSGMLGGANVITHISNDDQLSNTTA
VALGGANILTKKGKGNTLAVMGGGANVLTHVGDGTTTGVMVGGANILTKIGNGDTTGIML
GVGNVLTHVGDGQTLGVMGAAGNIFTKVGDGTSIAVMIGAGNIFTHVGEGNAWALMGGLG
NVFTKVGNGDALALMVAEANVFTHIGDGMSVALMLAKGNVATKVGNGTTLAAMVGNANIF
THIGHGSTFAAMIGQANIMTKVGNDLTAALMVGKANIMTHVGDGTSLGLFAGEVNVMTKV
GNGTTLAAMFGKANIMTHVGDGLTGVLALGEANIVTKVGDDFMGVVAAAKANVVTHVGDA
TTAAVLAGKGNILTKVGEGTTVGLLISDVGNVMTHVGDGTTIGIAKGKANLITKVGDGLG
VNVAWGQANVFTQVGDGDRYNFAKGEANLITKVGDGQEVSVVQGEANIITHVGNGDDYTG
AWGKANVITKVGNGRNVVLAKGEANIVTQVGNGDSFNALWSKGNIVTKVGDGMQVTAAKG
QANITTTVGNGLSVTAAYGDANINTKVGDGVSVNVAWGKYNINTKVGDGLNVAVMKGKAN
ANIHVGDGLNINASYAQNNVAIKVGNGDFYSLAVASSNTSSNKLSALFDNIKQTVLGVGG
SQAINYLVQGDEASSSGTHKGRGAIATPEITKLDGFHMDAIKEVGSDLGDSLTGSVTKVD
TPDLNKMQHALNVDDSSVQAPNLIVNGDFELGEHGWQSTHGVEASYAGSVYGVEGEGHGA
RVIELDTYTNTSLYQDLANLAQGEVIAVSFDFAKRAGLSNNEGIEVLWNGEVVFSSSGDE
SAWQQKTLKLTAQAGSNRIEFKGTGHNDGLGYILDNVVATSESSQQANAIREHASQPQAA
QNALSDKERAEADRQRLEQEKQKQLDAVAGSQNQLEATDQQALENNGQAQRDAVQEESET
VTAELTKLAQGLDVLDGQATHTGESGDQWRNEFASGLLAGVQTQLDDAKQLANDKIAEAK
QTHADNQNKVKDAVAKSEAGVAKGEQNRAGAEQDIADAQADAEKRKADALAKGNEAKQAE
FDAHNAVNNAQSRGDRDVQMAENKANQAQADAQGAKQNEGDRPDRQGVTGSGLSGNAHSV
EGAGETDRHVNTDSQTNADGRFSEGLTEQEQEALEGATNAVNRLQINAGIRGKNSVSTIT
SMFTEANTDSIVVPTTTSQDVVRKEVRISGVNLEGLGEASHDSAVSLVAARAEKVANLYR
WLDSDYPRATEQYIPVPGFERVDVNVSDETKQRLTQFVSGYIEHTDNQVPKDQAQALATL
FVEATLNYDWDKRVEFLTKLESYGYSFEAPHGENSLVSFWSGRNFKEYRNVLDNAQPDGK
KVVYDIDVQGNAFALKLNKQLMRWGDMFLDLDNADQNHLQSSIEAAAYSNTGFWSSVYAT
GAKDDVYVIAEGGMRLGNYFWNVELPLLRQLQREGLVGEIRLLDKPVSEYKDVPVNEIGH
KLTDAGVGVKVRFDALSAEQQAELLAINPKGYKADSLVELDVKLSAIDSMLRDALPFYSL
RTERNLLVQEGDEGFKVRAWPGNDDKSKTIVLDNPEDATQQKTIERFILANFQNFEQMPD
ELFLVDNKVISHDKGITHVLAQKVDGAWLYNAKVDLMSVTELLDAANVTGKIRGESYQQV
IDALADYHASITEHADYAPESVEKLLNLRKNIEGYVLGHPDSGRIAAMNSLLNQVNTRLE
EVSVLAVSEPNIKAQDSFSRLYDQLETANLKGTKHLYLDQNGEFVTKGKGHLVNIDLLGN
SEAVIEKVKLAVSNEYGQTIADTIFAGLTAHDLAKDGKGIDIAGLKKVHLAIEQHLSPVS
ATLFLWKPSDHSALGHAALQIGQGRNQINTDQALAYNQSNYVSWWPMGSKSSSLNHLFDV
SSEAMPDLKLRWKDFSQPAAQGESLAFDMQSEENDDFGLKSAEDKLKDFIKQVASASGVD
EKFKDISEAFTMMALMNPDILESANIPEHISKPFVDQWNDTSYDMQDVAQRFAKELQEQA
KVAVNSEQMEQQISEVVRRFAKDELDKIQTFKEMQADQGRVFRINLEGLDVAAMQAEWHR
LSNDSDARYQLLNKNCSSIVAKVLKAGGEDKLIGHTWRPKFGVWTPTELFNFAQDLQEAQ
LVSHTKKDKQHIDTDSLQSTDRVLESLGESKQTTLDLSSVLTKDELKNEAKVFAKPIGES
YQKILDQLDLLHATQGDKQLEAGLRLNNLVDDYVSSHEKSGRNTALLSLKNRVTESLYSN
VAQESRVEIAKLSADRIDLAVDLLHRLRSSTNEVSSVVDIKSLADGTKYNSQESLAVLSK
QEVPFNKDLQDQQLVQGRVAGEAVLNKVQLSDDEIKGIKWYTSEGFQYVNEALRKEEKLA
YFVKDNAVNAVKGLSKLETFEGTVYRAFMPGVSLNDLASHVTPGQLFSDQGFTSTSTSTE
LAKSFRGGKGTVILTILDAKGTNVAGLAQLNQAEVLLNPGAHLRIEAVKETDQNLHIVAK
YTEEFRAGEIVRNLFDGKTIGIAINQNTSTINESVVTSFDHDDITAILKPKPLLEENKLG
VGQQVQNRNVQNWYTADVTVIDGGDTRFDGQVIVQMENDPVVAKAAASLAGKHAENSVIV
QLDADGNYRVVYGEPSKLDGKLRWQLVGHGRDHSEHNNTYLSGHSADELAVKLAKFQQTF
NQAENISSKPDHISIVGCSLVSNDKQKGFGHQFINAMDANGLRVDVSVRSTDIAVDAEGR
KYTKDANGDWVQKAESNKVSLSWDAQGEVVAKDERIRNGIAEGDIDLSRIGVSDVDEPAR
GAIGDNSDVFDAPEKRKPETEVIANSSNSNQLSYSGNIQVNVGEGEFTAVNWGTSNVGIK
VGTGGFKSLAFGDNNVMVHLGNGDSRHSANIAGYQAFEGAQMFVGNRNVSFNMGRSNDLL
VMMEKSIPTPPLVNPFDGAARISGVLQNIATSGQGEGWLAAQEQQWTLSGAKKFVKDMSG
LDQSSSVDYTTLVELDSQNERDSRGLKHDAEATLNKQYNQWLSGNGNSGTSQLSRADKLR
QANEKLAFNFAVGGQGADIQVTTGNWNFMFGDNIQSILDTNLGSLFGLMTQQFTATGQAK
TTFTYTPQDLPRQLKNKLLGKLAGVGADTTLADIFGVDYTASGQIVSRNGQAVDGVAILK
EMLEVIGEFSGDQLQAFIDPAKLLDSLKAGIDMGADGIKSFAETHGLKEKAPEEEKDNSS
VSVNGASANSTQGAADGNIETTETQERAFGFNSLNLPNLFATIFSQDKQQEMTSLVENLK
QNLTADLLNMKEKTFDFLRNSGHLQGDGDINISLGNYNFNWGGDGKDLGAYLGDNNNFWG
GRGDDVFYATGTSNIFTGGEGNDMGVLMGRENMMFGGEGNDTAVVAGRINHVFLGAGDDQ
SFVFGEGSEIDTGTGRDYVVTSGNFNRVDTGDDQDYSVTIGNNNQVELGAGDDFANVFGN
YNRINAGTGNDVVKLMGYHAVLNGGDGDDHLIAAAISKFSHFDGGDGRDLMVLGGYQNTF
KGGTDVDSFVVSGDVIDNLVEDIRSEDNIVFNGIDWQKLWFERSGYDLKLSILRDPSNDS
DQAKFEHIGSVTFSDYFNGNRAQVVIAMSEKDLSGEREYTMLSDSAIDALVQAMSGFEPQ
AGDNGFIDSLESKSQAAIGMAWSDVVHKKGLMV
Download sequence
Identical sequences WP_002032380.1.97405

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