SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for WP_003512395.1.31213 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  WP_003512395.1.31213
Domain Number 1 Region: 199-466
Classification Level Classification E-value
Superfamily RCC1/BLIP-II 1.66e-71
Family Regulator of chromosome condensation RCC1 0.03
Further Details:      
 
Domain Number 2 Region: 109-238
Classification Level Classification E-value
Superfamily RCC1/BLIP-II 6.8e-29
Family Regulator of chromosome condensation RCC1 0.062
Further Details:      
 
Domain Number 3 Region: 35-103
Classification Level Classification E-value
Superfamily Type I dockerin domain 1.37e-18
Family Type I dockerin domain 0.00078
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) WP_003512395.1.31213
Sequence length 469
Comment LytTR family transcriptional regulator [Ruminiclostridium thermocellum]; AA=GCF_000015865.1; RF=representative genome; TAX=203119; STAX=1515; NAME=Ruminiclostridium thermocellum ATCC 27405; strain=ATCC 27405; AL=Complete Genome; RT=Major
Sequence
MRKYGLKKIVWMLGILCFLVVSLNTSIFAADGKNVVLGDVNGDSKINAIDVLLMKKYILK
VINDLPSDGVKAADVNADGQINSIDFTWLKKYMLKAVEKFPGEASNNPDAVIQFESGFAH
SVLLKKDGTVWVLGNNGKGQLGLPEVSAVNEPVMINGLSGIKSVAAGREHTLALQEDGTL
WAWGNNYSLQLIEYMERDPDTKERFTSIPIKVETHSDIKYVAAKFSRTLIVKNDGTVWLY
SLPPINTSSDAEYMPWEIKGFGDIKMADIGTGHIVALREDGTVWTWGENVWGQLGNGWQQ
HHNIHTYIYFEPNQAKNLSDIVSIAAGDAHSVALKSDGTVWTWGSNFNGELGNGTTTYIL
EPKKVEGLEDIVAIDAGIGHTVALKADGTVWVWGKNSYGQLGNGTTMRSTVPIQVEGLEG
IVAIQAGMECTIAYKNDGTVWAWGKNDFGQLGDGTFENILRPVKVFERK
Download sequence
Identical sequences A3DC18
gi|385779304|ref|YP_005688469.1| 203119.Cthe_0258 gi|125972780|ref|YP_001036690.1| WP_003512395.1.19387 WP_003512395.1.20586 WP_003512395.1.31213 WP_003512395.1.55520 WP_003512395.1.60145 WP_003512395.1.6636 WP_003512395.1.6965

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]