SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for WP_003821234.1.20675 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  WP_003821234.1.20675
Domain Number 1 Region: 2-144
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 7.09e-52
Family Ribonuclease PH domain 1-like 0.000018
Further Details:      
 
Domain Number 2 Region: 300-493
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 1.57e-49
Family Ribonuclease PH domain 1-like 0.0000178
Further Details:      
 
Domain Number 3 Region: 145-235
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 2.1e-30
Family Ribonuclease PH domain 2-like 0.00073
Further Details:      
 
Domain Number 4 Region: 455-553
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 1.39e-27
Family Ribonuclease PH domain 2-like 0.00011
Further Details:      
 
Domain Number 5 Region: 560-644
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 1.63e-22
Family Eukaryotic type KH-domain (KH-domain type I) 0.0029
Further Details:      
 
Domain Number 6 Region: 618-696
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 1.79e-18
Family Cold shock DNA-binding domain-like 0.00044
Further Details:      
 
Domain Number 7 Region: 239-326
Classification Level Classification E-value
Superfamily Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 8.11e-16
Family Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.0053
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) WP_003821234.1.20675
Sequence length 719
Comment MULTISPECIES: polyribonucleotide nucleotidyltransferase [Bordetella]; AA=GCF_001986835.1; RF=na; TAX=520; STAX=520; NAME=Bordetella pertussis; strain=H864; AL=Complete Genome; RT=Major
Sequence
MFNKVTKTFQYGQHSVVLETGEMARQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLT
VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSV
NPDIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSKMDLVVA
GTENAVLMVESEAKQLSEEIMLGGVVFGHEQMQAAINAIHDLVRDAGKPDWDWQPAPKNE
ALIAAVSAAAQEGLNAAYQIREKQARTTKLREVYAAVQAAMAEQAAQAGQPAPDSVGVDN
ILFDLEARIVRSQILNGEPRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVAT
LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALLPLL
PAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSGKF
AVLTDILGDEDHLGDMDFKVAGTETGITALQMDIKIQGITKEIMQVALAQAREGRLHILG
KMRDALEGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI
VIASVDETQAKEAQRRIVELTADVEVGQIYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA
NYRIANINDVLKVGQPVRVKVIEADDKGRLRLSIKAIGGIEQQQSGTAEPAAQSEPQAE
Download sequence
Identical sequences A0A063USK2 A0A0A0XJK5 A0A0C6PCR4 A0A0E8CDB2 A0A0N2IJD3 A0A0T7CQZ3 A0A171JZN6 A0A1M9AQE0 A0A2J9U715 K0M9U0 Q7VZU0 Q7W570
NP_879610.1.91861 WP_003821234.1.100022 WP_003821234.1.100434 WP_003821234.1.100555 WP_003821234.1.100619 WP_003821234.1.100675 WP_003821234.1.100759 WP_003821234.1.100989 WP_003821234.1.101082 WP_003821234.1.101128 WP_003821234.1.101132 WP_003821234.1.10115 WP_003821234.1.101264 WP_003821234.1.101372 WP_003821234.1.101424 WP_003821234.1.10149 WP_003821234.1.101703 WP_003821234.1.10189 WP_003821234.1.101955 WP_003821234.1.10527 WP_003821234.1.10899 WP_003821234.1.11100 WP_003821234.1.11718 WP_003821234.1.12242 WP_003821234.1.12615 WP_003821234.1.12628 WP_003821234.1.12642 WP_003821234.1.12812 WP_003821234.1.12848 WP_003821234.1.12960 WP_003821234.1.12961 WP_003821234.1.12998 WP_003821234.1.13010 WP_003821234.1.13337 WP_003821234.1.13387 WP_003821234.1.13571 WP_003821234.1.13878 WP_003821234.1.13976 WP_003821234.1.1435 WP_003821234.1.14857 WP_003821234.1.14969 WP_003821234.1.15153 WP_003821234.1.15298 WP_003821234.1.15595 WP_003821234.1.15680 WP_003821234.1.15694 WP_003821234.1.16132 WP_003821234.1.16456 WP_003821234.1.16646 WP_003821234.1.16872 WP_003821234.1.16901 WP_003821234.1.16953 WP_003821234.1.17083 WP_003821234.1.1750 WP_003821234.1.17872 WP_003821234.1.18020 WP_003821234.1.18291 WP_003821234.1.18525 WP_003821234.1.18595 WP_003821234.1.18642 WP_003821234.1.18982 WP_003821234.1.19155 WP_003821234.1.19208 WP_003821234.1.19242 WP_003821234.1.19511 WP_003821234.1.19550 WP_003821234.1.19657 WP_003821234.1.19676 WP_003821234.1.19828 WP_003821234.1.20036 WP_003821234.1.20111 WP_003821234.1.20365 WP_003821234.1.20392 WP_003821234.1.20462 WP_003821234.1.20642 WP_003821234.1.20675 WP_003821234.1.20734 WP_003821234.1.20770 WP_003821234.1.20917 WP_003821234.1.2111 WP_003821234.1.21238 WP_003821234.1.21550 WP_003821234.1.2161 WP_003821234.1.21624 WP_003821234.1.21837 WP_003821234.1.21880 WP_003821234.1.21917 WP_003821234.1.22017 WP_003821234.1.22232 WP_003821234.1.22312 WP_003821234.1.22423 WP_003821234.1.22487 WP_003821234.1.22593 WP_003821234.1.22705 WP_003821234.1.22732 WP_003821234.1.23079 WP_003821234.1.23183 WP_003821234.1.23214 WP_003821234.1.23368 WP_003821234.1.23599 WP_003821234.1.23657 WP_003821234.1.23701 WP_003821234.1.2372 WP_003821234.1.23851 WP_003821234.1.23951 WP_003821234.1.24160 WP_003821234.1.24171 WP_003821234.1.24320 WP_003821234.1.24339 WP_003821234.1.24505 WP_003821234.1.24682 WP_003821234.1.24749 WP_003821234.1.24761 WP_003821234.1.24819 WP_003821234.1.24942 WP_003821234.1.25162 WP_003821234.1.25335 WP_003821234.1.25395 WP_003821234.1.25725 WP_003821234.1.25784 WP_003821234.1.25806 WP_003821234.1.25823 WP_003821234.1.26275 WP_003821234.1.26498 WP_003821234.1.26501 WP_003821234.1.26519 WP_003821234.1.26991 WP_003821234.1.27032 WP_003821234.1.27198 WP_003821234.1.27788 WP_003821234.1.28030 WP_003821234.1.28495 WP_003821234.1.28615 WP_003821234.1.28748 WP_003821234.1.2876 WP_003821234.1.2883 WP_003821234.1.28911 WP_003821234.1.2925 WP_003821234.1.29446 WP_003821234.1.29460 WP_003821234.1.29496 WP_003821234.1.29534 WP_003821234.1.29639 WP_003821234.1.29721 WP_003821234.1.30048 WP_003821234.1.30085 WP_003821234.1.3025 WP_003821234.1.30325 WP_003821234.1.30681 WP_003821234.1.30804 WP_003821234.1.31246 WP_003821234.1.3146 WP_003821234.1.31517 WP_003821234.1.31632 WP_003821234.1.31640 WP_003821234.1.31875 WP_003821234.1.31881 WP_003821234.1.32044 WP_003821234.1.3209 WP_003821234.1.32390 WP_003821234.1.32490 WP_003821234.1.32589 WP_003821234.1.32619 WP_003821234.1.32640 WP_003821234.1.32662 WP_003821234.1.32673 WP_003821234.1.32732 WP_003821234.1.32787 WP_003821234.1.3326 WP_003821234.1.33272 WP_003821234.1.33320 WP_003821234.1.33342 WP_003821234.1.33489 WP_003821234.1.33785 WP_003821234.1.33898 WP_003821234.1.33904 WP_003821234.1.33992 WP_003821234.1.34216 WP_003821234.1.34487 WP_003821234.1.3449 WP_003821234.1.34660 WP_003821234.1.34761 WP_003821234.1.34880 WP_003821234.1.34936 WP_003821234.1.35228 WP_003821234.1.35282 WP_003821234.1.35457 WP_003821234.1.35734 WP_003821234.1.35819 WP_003821234.1.35894 WP_003821234.1.36280 WP_003821234.1.36572 WP_003821234.1.37410 WP_003821234.1.37431 WP_003821234.1.37631 WP_003821234.1.37705 WP_003821234.1.37780 WP_003821234.1.37794 WP_003821234.1.3800 WP_003821234.1.38046 WP_003821234.1.38178 WP_003821234.1.38328 WP_003821234.1.38534 WP_003821234.1.38923 WP_003821234.1.39109 WP_003821234.1.39143 WP_003821234.1.39323 WP_003821234.1.39544 WP_003821234.1.39649 WP_003821234.1.40067 WP_003821234.1.40089 WP_003821234.1.40139 WP_003821234.1.40287 WP_003821234.1.40381 WP_003821234.1.40521 WP_003821234.1.40671 WP_003821234.1.40699 WP_003821234.1.40717 WP_003821234.1.40885 WP_003821234.1.40905 WP_003821234.1.40936 WP_003821234.1.41152 WP_003821234.1.41181 WP_003821234.1.41295 WP_003821234.1.41354 WP_003821234.1.4140 WP_003821234.1.41420 WP_003821234.1.41565 WP_003821234.1.42055 WP_003821234.1.4233 WP_003821234.1.42334 WP_003821234.1.42416 WP_003821234.1.42497 WP_003821234.1.42576 WP_003821234.1.4318 WP_003821234.1.43230 WP_003821234.1.43238 WP_003821234.1.43282 WP_003821234.1.43291 WP_003821234.1.43400 WP_003821234.1.43401 WP_003821234.1.43734 WP_003821234.1.44190 WP_003821234.1.44232 WP_003821234.1.44259 WP_003821234.1.44349 WP_003821234.1.44451 WP_003821234.1.44576 WP_003821234.1.44662 WP_003821234.1.44958 WP_003821234.1.45070 WP_003821234.1.45311 WP_003821234.1.46219 WP_003821234.1.4628 WP_003821234.1.46321 WP_003821234.1.46447 WP_003821234.1.46719 WP_003821234.1.46778 WP_003821234.1.46785 WP_003821234.1.47170 WP_003821234.1.47512 WP_003821234.1.47517 WP_003821234.1.47818 WP_003821234.1.47874 WP_003821234.1.48179 WP_003821234.1.48301 WP_003821234.1.48344 WP_003821234.1.48641 WP_003821234.1.49081 WP_003821234.1.49649 WP_003821234.1.49980 WP_003821234.1.50490 WP_003821234.1.50707 WP_003821234.1.51064 WP_003821234.1.5120 WP_003821234.1.51286 WP_003821234.1.51344 WP_003821234.1.51362 WP_003821234.1.51769 WP_003821234.1.51879 WP_003821234.1.52025 WP_003821234.1.52065 WP_003821234.1.5222 WP_003821234.1.5240 WP_003821234.1.5290 WP_003821234.1.52986 WP_003821234.1.53067 WP_003821234.1.53156 WP_003821234.1.53271 WP_003821234.1.53477 WP_003821234.1.53604 WP_003821234.1.53618 WP_003821234.1.53654 WP_003821234.1.53658 WP_003821234.1.53791 WP_003821234.1.5380 WP_003821234.1.53816 WP_003821234.1.54042 WP_003821234.1.54106 WP_003821234.1.54204 WP_003821234.1.54460 WP_003821234.1.5457 WP_003821234.1.54628 WP_003821234.1.54632 WP_003821234.1.54710 WP_003821234.1.54734 WP_003821234.1.54904 WP_003821234.1.55255 WP_003821234.1.5531 WP_003821234.1.55350 WP_003821234.1.56056 WP_003821234.1.56084 WP_003821234.1.56254 WP_003821234.1.56330 WP_003821234.1.56421 WP_003821234.1.56752 WP_003821234.1.56758 WP_003821234.1.56782 WP_003821234.1.56892 WP_003821234.1.5701 WP_003821234.1.57082 WP_003821234.1.5712 WP_003821234.1.57255 WP_003821234.1.57383 WP_003821234.1.57552 WP_003821234.1.57713 WP_003821234.1.57806 WP_003821234.1.58338 WP_003821234.1.5837 WP_003821234.1.58529 WP_003821234.1.58577 WP_003821234.1.58765 WP_003821234.1.58806 WP_003821234.1.58896 WP_003821234.1.58923 WP_003821234.1.58964 WP_003821234.1.59089 WP_003821234.1.59128 WP_003821234.1.59319 WP_003821234.1.60003 WP_003821234.1.6039 WP_003821234.1.60428 WP_003821234.1.60747 WP_003821234.1.60780 WP_003821234.1.60837 WP_003821234.1.60856 WP_003821234.1.61051 WP_003821234.1.61242 WP_003821234.1.62052 WP_003821234.1.6229 WP_003821234.1.62500 WP_003821234.1.62599 WP_003821234.1.62940 WP_003821234.1.62965 WP_003821234.1.63049 WP_003821234.1.63136 WP_003821234.1.63205 WP_003821234.1.63299 WP_003821234.1.63640 WP_003821234.1.63728 WP_003821234.1.63754 WP_003821234.1.63791 WP_003821234.1.63948 WP_003821234.1.64270 WP_003821234.1.64318 WP_003821234.1.64375 WP_003821234.1.64451 WP_003821234.1.64622 WP_003821234.1.6471 WP_003821234.1.64999 WP_003821234.1.65148 WP_003821234.1.65861 WP_003821234.1.65865 WP_003821234.1.66032 WP_003821234.1.66036 WP_003821234.1.66098 WP_003821234.1.66177 WP_003821234.1.66583 WP_003821234.1.66618 WP_003821234.1.66638 WP_003821234.1.66798 WP_003821234.1.67435 WP_003821234.1.67535 WP_003821234.1.67743 WP_003821234.1.67928 WP_003821234.1.67933 WP_003821234.1.6801 WP_003821234.1.68280 WP_003821234.1.68311 WP_003821234.1.68338 WP_003821234.1.68516 WP_003821234.1.68884 WP_003821234.1.69041 WP_003821234.1.6922 WP_003821234.1.69494 WP_003821234.1.69590 WP_003821234.1.69618 WP_003821234.1.69751 WP_003821234.1.69835 WP_003821234.1.69885 WP_003821234.1.69935 WP_003821234.1.69949 WP_003821234.1.70145 WP_003821234.1.70388 WP_003821234.1.70426 WP_003821234.1.70575 WP_003821234.1.70715 WP_003821234.1.70740 WP_003821234.1.70854 WP_003821234.1.70866 WP_003821234.1.70972 WP_003821234.1.71157 WP_003821234.1.71181 WP_003821234.1.71349 WP_003821234.1.71489 WP_003821234.1.71506 WP_003821234.1.71774 WP_003821234.1.71889 WP_003821234.1.71963 WP_003821234.1.72041 WP_003821234.1.72076 WP_003821234.1.7212 WP_003821234.1.72199 WP_003821234.1.72213 WP_003821234.1.72312 WP_003821234.1.72409 WP_003821234.1.72456 WP_003821234.1.72670 WP_003821234.1.72737 WP_003821234.1.72849 WP_003821234.1.73143 WP_003821234.1.73290 WP_003821234.1.73474 WP_003821234.1.73787 WP_003821234.1.74018 WP_003821234.1.74166 WP_003821234.1.74203 WP_003821234.1.74209 WP_003821234.1.74467 WP_003821234.1.74492 WP_003821234.1.74613 WP_003821234.1.74634 WP_003821234.1.74903 WP_003821234.1.75340 WP_003821234.1.75646 WP_003821234.1.75754 WP_003821234.1.76046 WP_003821234.1.76310 WP_003821234.1.76380 WP_003821234.1.76506 WP_003821234.1.76527 WP_003821234.1.76691 WP_003821234.1.76901 WP_003821234.1.76950 WP_003821234.1.76959 WP_003821234.1.7758 WP_003821234.1.77597 WP_003821234.1.77807 WP_003821234.1.78117 WP_003821234.1.78299 WP_003821234.1.78490 WP_003821234.1.78627 WP_003821234.1.78721 WP_003821234.1.78958 WP_003821234.1.79121 WP_003821234.1.79194 WP_003821234.1.79301 WP_003821234.1.79623 WP_003821234.1.79624 WP_003821234.1.79643 WP_003821234.1.79978 WP_003821234.1.80271 WP_003821234.1.8033 WP_003821234.1.80800 WP_003821234.1.80838 WP_003821234.1.80851 WP_003821234.1.81051 WP_003821234.1.81135 WP_003821234.1.81411 WP_003821234.1.81501 WP_003821234.1.81757 WP_003821234.1.82018 WP_003821234.1.82054 WP_003821234.1.8207 WP_003821234.1.82146 WP_003821234.1.82152 WP_003821234.1.82356 WP_003821234.1.82364 WP_003821234.1.82559 WP_003821234.1.82588 WP_003821234.1.82632 WP_003821234.1.82713 WP_003821234.1.82734 WP_003821234.1.82751 WP_003821234.1.82940 WP_003821234.1.82972 WP_003821234.1.83190 WP_003821234.1.83298 WP_003821234.1.83392 WP_003821234.1.83406 WP_003821234.1.83428 WP_003821234.1.83507 WP_003821234.1.83509 WP_003821234.1.83669 WP_003821234.1.8381 WP_003821234.1.84043 WP_003821234.1.84078 WP_003821234.1.84114 WP_003821234.1.84624 WP_003821234.1.84856 WP_003821234.1.84859 WP_003821234.1.84958 WP_003821234.1.85121 WP_003821234.1.85139 WP_003821234.1.854 WP_003821234.1.85499 WP_003821234.1.85839 WP_003821234.1.86167 WP_003821234.1.86301 WP_003821234.1.86388 WP_003821234.1.86428 WP_003821234.1.86480 WP_003821234.1.86642 WP_003821234.1.86646 WP_003821234.1.87159 WP_003821234.1.87233 WP_003821234.1.87469 WP_003821234.1.87992 WP_003821234.1.8802 WP_003821234.1.88160 WP_003821234.1.88310 WP_003821234.1.88486 WP_003821234.1.88494 WP_003821234.1.88542 WP_003821234.1.88901 WP_003821234.1.88921 WP_003821234.1.89075 WP_003821234.1.89192 WP_003821234.1.89488 WP_003821234.1.89642 WP_003821234.1.89947 WP_003821234.1.90523 WP_003821234.1.90858 WP_003821234.1.91105 WP_003821234.1.91309 WP_003821234.1.91389 WP_003821234.1.91439 WP_003821234.1.91845 WP_003821234.1.91932 WP_003821234.1.91988 WP_003821234.1.92256 WP_003821234.1.92285 WP_003821234.1.92528 WP_003821234.1.92942 WP_003821234.1.93268 WP_003821234.1.9334 WP_003821234.1.93362 WP_003821234.1.9367 WP_003821234.1.93807 WP_003821234.1.93850 WP_003821234.1.93966 WP_003821234.1.93987 WP_003821234.1.94019 WP_003821234.1.94250 WP_003821234.1.94266 WP_003821234.1.94283 WP_003821234.1.94386 WP_003821234.1.94521 WP_003821234.1.94524 WP_003821234.1.9476 WP_003821234.1.94832 WP_003821234.1.95061 WP_003821234.1.95166 WP_003821234.1.95221 WP_003821234.1.95421 WP_003821234.1.95487 WP_003821234.1.95504 WP_003821234.1.95591 WP_003821234.1.95608 WP_003821234.1.95637 WP_003821234.1.95694 WP_003821234.1.95814 WP_003821234.1.96102 WP_003821234.1.96130 WP_003821234.1.96199 WP_003821234.1.96241 WP_003821234.1.96400 WP_003821234.1.96719 WP_003821234.1.9688 WP_003821234.1.969 WP_003821234.1.97215 WP_003821234.1.97275 WP_003821234.1.9744 WP_003821234.1.97750 WP_003821234.1.97985 WP_003821234.1.98081 WP_003821234.1.98149 WP_003821234.1.9825 WP_003821234.1.98258 WP_003821234.1.98303 WP_003821234.1.98580 WP_003821234.1.98669 WP_003821234.1.98995 WP_003821234.1.99135 WP_003821234.1.99254 WP_003821234.1.99261 WP_003821234.1.99407 WP_003821234.1.99607 WP_003821234.1.99644 WP_003821234.1.9977 WP_003821234.1.99857 WP_003821234.1.99971 YP_006897197.1.34978 YP_006970565.1.84680 gi|410421330|ref|YP_006901779.1| gi|33597949|ref|NP_885592.1| gi|410473916|ref|YP_006897197.1| gi|33591966|ref|NP_879610.1| gi|384203269|ref|YP_005589008.1| gi|412341810|ref|YP_006970565.1| gi|408416352|ref|YP_006627059.1| 257311.BPP3431 257313.BP0795

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