SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for WP_011176212.1.90613 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  WP_011176212.1.90613
Domain Number 1 Region: 200-450
Classification Level Classification E-value
Superfamily RNI-like 9.02e-59
Family Cyclin A/CDK2-associated p19, Skp2 0.028
Further Details:      
 
Domain Number 2 Region: 431-517
Classification Level Classification E-value
Superfamily RNI-like 2.28e-18
Family Cyclin A/CDK2-associated p19, Skp2 0.041
Further Details:      
 
Domain Number 3 Region: 44-118
Classification Level Classification E-value
Superfamily POZ domain 0.00000204
Family BTB/POZ domain 0.058
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) WP_011176212.1.90613
Sequence length 518
Comment hypothetical protein [Candidatus Protochlamydia amoebophila]; AA=GCF_000011565.1; RF=na; TAX=264201; STAX=362787; NAME=Candidatus Protochlamydia amoebophila UWE25; strain=UWE25; AL=Chromosome; RT=Major
Sequence
MANLEVTWAPTIQAPDLSSSPEEFQLSFQDGTSLTISHFQLDLLRKKSPYFKSFWSGNFQ
ETLQHPLALTQKEFTHLLNCVMDVNFKVPLEEITSFIQLADYYELIEVVKNLEKQLIDGY
KSQRFEPFSSTQKSLIGLKELLNFAQQCQLNILKNYLEFTVVSALLNQTSQLTEFKKILK
FFSNEIEALNFSENTYLIDAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVTLQHLN
LSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKLTDA
GLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTSLVA
LQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLSICK
KITDVGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGLVHL
KPLMALQHLNLSYCTNLTDAGLAHFKNLTTSLNLKLSR
Download sequence
Identical sequences Q6MAK9
264201.pc1666 WP_011176212.1.90613 gi|46447300|ref|YP_008665.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]