SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for WP_011607222.1.38265 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  WP_011607222.1.38265
Domain Number 1 Region: 83-216
Classification Level Classification E-value
Superfamily GntR ligand-binding domain-like 1.75e-30
Family GntR ligand-binding domain-like 0.0037
Further Details:      
 
Domain Number 2 Region: 12-104
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 1.03e-20
Family GntR-like transcriptional regulators 0.02
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) WP_011607222.1.38265
Sequence length 230
Comment GntR family transcriptional regulator [Frankia alni]; AA=GCF_000058485.1; RF=representative genome; TAX=326424; STAX=1859; NAME=Frankia alni ACN14a; strain=ACN14A; AL=Complete Genome; RT=Major
Sequence
MVNSMKTLGAAHRPLRELVADELRQRILDGRITQGSRVIEDRLAEELGVSRNPVREAIRA
LESEGLVEVTPRRGVVVTVISAEEAHDLIEVRAALEVTAVRRAAARGVDPAVLAELAEIV
ATGSEAAAAGEFERLPMLNTRFHDLLARGSGNGALVEVLRDLQNRLQLLFSTGVQRRSGG
AWDEHRRILDAIRAGDADWAEAEMRSHIRGAASRYEDTRAGVAAATGGAA
Download sequence
Identical sequences Q0RCM9
WP_011607222.1.38265 gi|111225516|ref|YP_716310.1| 326424.FRAAL6172

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]